Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13730 414 / 4e-142 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) AT1G04830 389 / 3e-132 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G30710 102 / 2e-23 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G28550 71 / 4e-13 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G20440 71 / 7e-13 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G59570 68 / 6e-12 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G52580 67 / 1e-11 RabGAP/TBC domain-containing protein (.1.2) AT5G41940 65 / 6e-11 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G24390 64 / 7e-11 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G43490 64 / 1e-10 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G069300 [exp] 788 / 0 AT4G13730 385 / 1e-130 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.001G316700 [exp] 426 / 4e-146 AT4G13730 586 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.017G057100 [exp] 421 / 1e-144 AT4G13730 602 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.007G134200 [exp] 108 / 2e-25 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.017G023200 [exp] 71 / 9e-13 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.018G127500 [exp] 70 / 2e-12 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.007G132900 [exp] 68 / 5e-12 AT2G43490 808 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.006G066300 [exp] 67 / 8e-12 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.015G007400 [exp] 67 / 1e-11 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017104 [exp] 399 / 2e-135 AT1G04830 580 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10037829 [exp] 362 / 2e-121 AT1G04830 537 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10008148 [exp] 105 / 2e-24 AT2G30710 625 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10019370 [exp] 93 / 1e-20 AT2G30710 568 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027046 [exp] 90 / 5e-19 AT2G30710 526 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027697 [exp] 71 / 3e-13 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10004802 [exp] 72 / 5e-13 AT2G43490 499 / 2e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Lus10039968 [exp] 70 / 2e-12 AT5G52580 867 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10022356 [exp] 68 / 7e-12 AT3G49350 650 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10038091 [exp] 68 / 9e-12 AT5G52580 938 / 0.0 RabGAP/TBC domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [poplar] [flax] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Potri.018G131300.1 pacid=42800767 polypeptide=Potri.018G131300.1.p locus=Potri.018G131300 ID=Potri.018G131300.1.v4.1 annot-version=v4.1 ATGCTTAAAAATGGCAAGCTCAAGCTCCCTGACAAGCTCGGTGGTTTGGTCTCTGGTTTTGATGACAAAGAAATGAAAAATGGAGGGTCCGACCCGGTTC TCGAGTCCGGCGAGGAGCTTGAGATCATGGAGCCTAATGGGATTGAGTTAGGCCACAAAGAAAATGCGTATGAATTTGATGATTTGGTTAATGATACAGA TGTGGATAACGAAGATGCTTTTAGGACCCGAAAGAGACCCGATAAAGATGGGTCGGGTCAGGTTTCGGTTATGGAGGTCATTGCAGCTGATGAGAAAAGG TCTGATGTTGAATATGAGCTCTCTCAAAAGGAGATAAATTTGGAAAAGCTAAGGAGGATTGCTAGTATGGGGCTTCCTGATGGAGGAGGATTGAGGGCAA CAGCTTGGAAGCTACTCTTGGGTTATTTATCTCCTTCTCATGATTTGTGGGAAAAGGAGTTAACCGAGAATAGACAAAAATATGCTATGCTAAAAGAGGA GCTTCTACTGAGTCCTTCAGAGTACACCAGGGTAAAAGAAGATGCTATGATTTCTGCTGAGCTGAGTGGCGAACATGATGATGCCGGACCACTTAAGCGA CAAGGAATTTCTCATGGAGATCACCCCCTGAGTATTGTTAAGGCTAGTGCTTGGCATCACTACTTCAAGCATACAGAGATTGCAGAACAGATTGATCGTG ATTTGCTGCGCACACATCCAGATATGAAATTCTTCTCAGGGGAGTCCTCATTCAGTAAGAAAAATAGGGAAGCAATGAGGAAAATTCTTCTTCTATTTGC AAAACTAAATCCTGCCATTCGTTATGTTCAAGGCATGAATGAGGTCTTGGCGCCAATATTCTATGTATTTAGCACCGACACTGATGAACAGAATGCTGTA AATGCAGAAGCAGATAGTTTTTCTTGTTTTGTTCGATTGCTGAGCGACTCAGTGGATCACTTCTGCCAACAGTTGGATAATAGTCCAGTTGGCATCCTCT CCACTCTTTCCCGCTTGGCAGAATTATTGAAAGAAAATGATGAGGAATTGTGGAAGCATCTTGAATTCACAACCAAGGTTAAGCCACAATTTTATGCATT CAGGTGGATCACTTTGCTACTCACTCAAGAATTCAACTTCCAATCCATTTTAAGAATCTGGGATTCTCTTTTGAGTAATCCTTTCGGGATTCAGGATATG CTATTGCGGATCTGTTGTGCTATGCTATTATGCATGAAAAGCAGGCTATTGAGTGGTGATTTTGCAGCTAACTTGAGGCTTTTACAGCACTATCCTGACA TCAACATTGAACACCTTCTCCGGGTAGCTCAGGATTTAAGTGCAGATACTTCATCCTACAGTTTGTCTTTGTAA
AA sequence Show only first row Show all	>Potri.018G131300.1 pacid=42800767 polypeptide=Potri.018G131300.1.p locus=Potri.018G131300 ID=Potri.018G131300.1.v4.1 annot-version=v4.1 MLKNGKLKLPDKLGGLVSGFDDKEMKNGGSDPVLESGEELEIMEPNGIELGHKENAYEFDDLVNDTDVDNEDAFRTRKRPDKDGSGQVSVMEVIAADEKR SDVEYELSQKEINLEKLRRIASMGLPDGGGLRATAWKLLLGYLSPSHDLWEKELTENRQKYAMLKEELLLSPSEYTRVKEDAMISAELSGEHDDAGPLKR QGISHGDHPLSIVKASAWHHYFKHTEIAEQIDRDLLRTHPDMKFFSGESSFSKKNREAMRKILLLFAKLNPAIRYVQGMNEVLAPIFYVFSTDTDEQNAV NAEADSFSCFVRLLSDSVDHFCQQLDNSPVGILSTLSRLAELLKENDEELWKHLEFTTKVKPQFYAFRWITLLLTQEFNFQSILRIWDSLLSNPFGIQDM LLRICCAMLLCMKSRLLSGDFAANLRLLQHYPDINIEHLLRVAQDLSADTSSYSLSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.018G131300 [exp]	0	1
AT4G03115			Mitochondrial substrate carrie...		Potri.014G135530 [exp]	2.44	0.8205
AT1G01880			5'-3' exonuclease family prote...		Potri.014G077300 [exp]	12.36	0.7551
					Potri.005G156500 [exp]	18.97	0.7646
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Potri.014G077800 [exp]	22.09	0.7726
AT5G09790		PDE336, SDG15, ...	SETDOMAIN GROUP 15, PIGMENT DE...		Potri.005G058000 [exp]	24.06	0.7799
AT1G45150			unknown protein		Potri.014G180700 [exp]	25.49	0.7687
AT1G19485			Transducin/WD40 repeat-like su...		Potri.006G036601 [exp]	37.37	0.7606
AT5G12370		SEC10	exocyst complex component sec1...		Potri.002G164100 [exp]	37.41	0.7577
AT1G16570			UDP-Glycosyltransferase superf...		Potri.001G394300 [exp]	39.49	0.7364
AT3G13062			Polyketide cyclase/dehydrase a...		Potri.007G002700 [exp]	41.27	0.6759

Compare expression of checked genes

Potri.018G131300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.