Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20150 356 / 1e-124 ATSPX1 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) AT2G26660 353 / 8e-123 ATSPX2 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) AT5G15330 203 / 2e-63 ATSPX4 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) AT2G45130 191 / 5e-60 ATSPX3 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) AT3G23430 47 / 1e-05 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) AT4G11810 45 / 6e-05 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1) AT4G22990 44 / 7e-05 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT2G03240 41 / 0.0008 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G069500 [exp] 461 / 3e-165 AT5G20150 359 / 8e-126 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.018G028200 [exp] 323 / 6e-111 AT2G26660 321 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Potri.006G253400 [exp] 320 / 1e-109 AT5G20150 308 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.002G143900 [exp] 224 / 1e-72 AT2G45130 276 / 1e-93 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.014G061400 [exp] 224 / 2e-72 AT2G45130 269 / 4e-91 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.001G193200 [exp] 173 / 1e-53 AT5G20150 158 / 2e-48 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.017G086600 [exp] 173 / 5e-52 AT5G15330 335 / 4e-115 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) Potri.001G135950 [exp] 99 / 1e-25 AT2G45130 121 / 7e-35 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.010G069000 [exp] 44 / 8e-05 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043272 [exp] 384 / 6e-135 AT5G20150 343 / 8e-120 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10030095 [exp] 368 / 1e-128 AT5G20150 356 / 8e-125 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10019415 [exp] 358 / 2e-122 AT5G20150 326 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10002018 [exp] 316 / 3e-108 AT2G26660 308 / 2e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10002908 [exp] 314 / 3e-107 AT2G26660 309 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10009314 [exp] 54 / 7e-08 AT4G22990 941 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10006340 [exp] 45 / 8e-05 AT4G22990 1128 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10015852 [exp] 44 / 0.0001 AT4G22990 926 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10021164 [exp] 44 / 0.0001 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10011799 [exp] 43 / 0.0002 AT3G23430 1080 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [poplar] [flax] SPX SPX domain
Representative CDS sequence Show only first row Show all	>Potri.018G131500.2 pacid=42800392 polypeptide=Potri.018G131500.2.p locus=Potri.018G131500 ID=Potri.018G131500.2.v4.1 annot-version=v4.1 ATGAAATTCGGCAAAAGCTTAAGCAACCAGATTGAAGAAACATTACCTGAATGGAGAGACAAGTTTCTCTCTTACAAAGAACTCAAGAAGAGATTGAAAC TCATCGAGCCAAACAATAACAACAGCACAACCAAGAACAATGGAGACTCCCGGCCGTTGAAAAAGCCAAGATTCGCCGCCGCAGAAGGTGGTGGAGGAGG AGATTGCAAGGAAGGAAGTATGACAAAAGAAGAGATTGATTTTATTAAGCTGTTAGATGATGAGCTTGAGAAATTCAACAGCTTTTTTGTTGAGAAAGAA GAAGAGTACATCATCAGATTAAAGGAGTTGCAAGATAGTGTGGCAAAGGCAATCAATTCCAATGAAGAGATGATAAAAATTAGGAAGGAGATTGTAGATT TCCACGGAGAGATGGTTTTGCTGGAGAATTATAGTGCTCTGAACTATACTGGATTGGTAAAAATACTGAAGAAATATGATAAAAGAACTGGTGCTCTCAT TCGCCTGCCCTTTATCCAGAGGGTGTTGCAACAGCCTTTTTTCACCACCGACCTGCTCTACAAGCTCGTTAAAGAGTGTGAGGCAATGCTCGACCGCCTC CTCCCATTGAACGAACTGCCGCCATCTTCAGTTGAAGCAGCTGATGGGGATGATGACTTGTGTGGTGATCCTTCGACCTCTTCAACCACCACAAATGATG ACCTACCCAGATTCCCAAGGGAACTTGCAGAGATTGAACTTATGGAGAGTTCATCTATGAAGAGCACCATATCTGCATTGCGTGTTCTAAAGGAAATTCG AAGCAAGAGCTCCACTGTTAGTGTTTTCTCATTGCCACCACTTCAGATAAGCGGATTGGAGGATGCTTGGAAAAAGGTTCCTATACTTGAACAAGAAGCC AAGTAG
AA sequence Show only first row Show all	>Potri.018G131500.2 pacid=42800392 polypeptide=Potri.018G131500.2.p locus=Potri.018G131500 ID=Potri.018G131500.2.v4.1 annot-version=v4.1 MKFGKSLSNQIEETLPEWRDKFLSYKELKKRLKLIEPNNNNSTTKNNGDSRPLKKPRFAAAEGGGGGDCKEGSMTKEEIDFIKLLDDELEKFNSFFVEKE EEYIIRLKELQDSVAKAINSNEEMIKIRKEIVDFHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIQRVLQQPFFTTDLLYKLVKECEAMLDRL LPLNELPPSSVEAADGDDDLCGDPSTSSTTTNDDLPRFPRELAEIELMESSSMKSTISALRVLKEIRSKSSTVSVFSLPPLQISGLEDAWKKVPILEQEA K

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Potri.018G131500 [exp]	0	1
AT1G64500			Glutaredoxin family protein (....		Potri.001G088900 [exp]	5.00	0.9368
AT2G15020			unknown protein		Potri.009G094100 [exp]	8.83	0.9345
AT3G18950			Transducin/WD40 repeat-like su...		Potri.004G148400 [exp]	15.49	0.9180
AT5G40250			RING/U-box superfamily protein...		Potri.015G073600 [exp]	16.94	0.8705
AT5G16340			AMP-dependent synthetase and l...		Potri.013G096200 [exp]	17.02	0.9173
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Potri.001G124200 [exp]	17.32	0.8870
AT4G21990		3-Apr, PRH-26, ...	PAPS REDUCTASE HOMOLOG 26, APS...		Potri.004G011525 [exp]	18.33	0.9108
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Potri.009G053800 [exp]	19.59	0.9106
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G174600 [exp]	19.74	0.9095
AT4G16490			ARM repeat superfamily protein...		Potri.006G015100 [exp]	22.00	0.9086

Compare expression of checked genes

Potri.018G131500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.