Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) AT5G64120 350 / 1e-120 Peroxidase superfamily protein (.1) AT5G39580 348 / 5e-120 Peroxidase superfamily protein (.1.2) AT4G25980 326 / 1e-110 Peroxidase superfamily protein (.1) AT5G64110 322 / 2e-109 Peroxidase superfamily protein (.1) AT5G64100 307 / 6e-104 Peroxidase superfamily protein (.1) AT5G17820 286 / 7e-96 Peroxidase superfamily protein (.1) AT5G06720 280 / 3e-93 ATPA2 peroxidase 2 (.1) AT1G77100 278 / 2e-92 Peroxidase superfamily protein (.1) AT1G05240 277 / 4e-92 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G069600 [exp] 613 / 0 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) Potri.016G125000 [exp] 389 / 3e-136 AT2G41480 419 / 7e-148 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 289 / 1e-96 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 287 / 4e-96 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 285 / 3e-95 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 285 / 3e-95 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 285 / 3e-95 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 285 / 3e-95 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.012G006800 [exp] 281 / 1e-93 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015555 [exp] 478 / 3e-171 AT2G41480 432 / 9e-153 Peroxidase superfamily protein (.1) Lus10007051 [exp] 370 / 9e-129 AT2G41480 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10012684 [exp] 365 / 2e-126 AT2G41480 395 / 2e-138 Peroxidase superfamily protein (.1) Lus10007052 [exp] 362 / 2e-125 AT2G41480 400 / 1e-140 Peroxidase superfamily protein (.1) Lus10020826 [exp] 345 / 8e-119 AT2G41480 375 / 1e-130 Peroxidase superfamily protein (.1) Lus10027163 [exp] 282 / 6e-94 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10025535 [exp] 283 / 6e-93 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10039681 [exp] 279 / 7e-93 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10027164 [exp] 278 / 2e-92 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10015127 [exp] 278 / 3e-92 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.018G131600.1 pacid=42800473 polypeptide=Potri.018G131600.1.p locus=Potri.018G131600 ID=Potri.018G131600.1.v4.1 annot-version=v4.1 ATGGAAGGGTTATGGCTGGTTGTTATGGTGATTTTTGTTATGGCTTTGTCTGTGGAAAGCCAATTGAAAACAGGGTTTTATTCTTCTTCATGTCCGAAAG CTGAGGCCATAGTTAGGTCCACAGTTGAATCATACTTCAAGAAAGATCCTACCATTGCAGCAGGATTGCTCAGGCTTCATTTTCACGACTGCTTTGTTCA GGGCTGTGATGGTTCAGTGTTAATTGCAGGCCGGTCTTCTGCTGAGAGAAATGCGTTGCCAAATCTAGGATTAAGAGGGTTTGAAGTAATTGATGATGCC AAATCACAGATAGAGGCCTCATGCCCTGGCGTGGTCTCGTGTGCTGATATACTAGCATTGGCTGCTCGTGATGCTGTGGACTTGAGTGATGGTCCAAGTT GGTCAGTCTCAACAGGTAGAAGAGATGGCAGAGTCTCTTTATCATCCCAGGTCTCAAAATATTTACCTTCTCCTCTAGACTCCATTGCGGTCCAGAAGCA AAAATTTGCTGACAAAGGCCTTGACGATCACGATCTCGTAACTCTCGTTGGAGCACATACCCTAGGCCAAACACACTGCCAGTTCATACGGTATCGCCTA TATAATTTCACAGCAACAGGAAATGCAGATCCAACTATAAACCAATCATTCCTATCACAACTTCGAGCTCTGTGCCCCAACAACGGTGATGGCACAATAC CAGTTCCATTAGATAAAGATAGCCAGACAGATTTTGATACAAGCTTCTTTAAGAACGTACGTGATGGTAATGGAGTTTTGGAGTCTGACCAGAGACTTTG GGATGATGCTGCAACACGAGATGTTGTGAAAAAATATGCCGGCACCATAAGAGGACTTTTGGGACATAGGTTTGACATTGAGTTCAGGCAAGCCATGGTT AAAATGAGTAGCATTGACGTGAAAACTGGGACAAATGGAGAGATTAGAAAAGCTTGTTCAAAGTTCAATTAA
AA sequence Show only first row Show all	>Potri.018G131600.1 pacid=42800473 polypeptide=Potri.018G131600.1.p locus=Potri.018G131600 ID=Potri.018G131600.1.v4.1 annot-version=v4.1 MEGLWLVVMVIFVMALSVESQLKTGFYSSSCPKAEAIVRSTVESYFKKDPTIAAGLLRLHFHDCFVQGCDGSVLIAGRSSAERNALPNLGLRGFEVIDDA KSQIEASCPGVVSCADILALAARDAVDLSDGPSWSVSTGRRDGRVSLSSQVSKYLPSPLDSIAVQKQKFADKGLDDHDLVTLVGAHTLGQTHCQFIRYRL YNFTATGNADPTINQSFLSQLRALCPNNGDGTIPVPLDKDSQTDFDTSFFKNVRDGNGVLESDQRLWDDAATRDVVKKYAGTIRGLLGHRFDIEFRQAMV KMSSIDVKTGTNGEIRKACSKFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41480			Peroxidase superfamily protein...		Potri.018G131600 [exp]	0	1
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Potri.009G061100 [exp]	1.41	0.8420	Pt-FRD3.1
AT5G14750	MYB	WER1, WER, AtMY...	WEREWOLF 1, WEREWOLF, myb doma...		Potri.001G169600 [exp]	1.41	0.8379
AT2G37130			Peroxidase superfamily protein...		Potri.006G129900 [exp]	10.19	0.7449
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.018G112000 [exp]	10.39	0.7797
AT1G73220		1-Oct, ATOCT1	organic cation/carnitine trans...		Potri.015G029400 [exp]	20.19	0.7128
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Potri.016G056800 [exp]	21.84	0.8147
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Potri.016G105100 [exp]	22.93	0.6242	Pt-PAS1.2
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.005G143800 [exp]	28.14	0.7526	CYP81S7,CYP81.2
AT2G45720			ARM repeat superfamily protein...		Potri.002G153700 [exp]	33.76	0.6999
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.005G111700 [exp]	36.94	0.7223	ATHK1.3

Compare expression of checked genes

Potri.018G131600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.