Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26670 364 / 1e-127 GUN2, ATHO1, TED4, HY6, HY1 REVERSAL OF THE DET PHENOTYPE 4, HEME OXYGENASE 6, GENOMES UNCOUPLED 2, ARABIDOPSIS THALIANA HEME OXYGENASE 1, Plant haem oxygenase (decyclizing) family protein (.1), Plant haem oxygenase (decyclizing) family protein (.2) AT1G69720 333 / 3e-115 HO3 heme oxygenase 3 (.1.2) AT1G58300 287 / 3e-97 HO4 heme oxygenase 4 (.1) AT2G26550 211 / 6e-67 HO2 heme oxygenase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G069700 [exp] 484 / 4e-175 AT2G26670 363 / 3e-127 REVERSAL OF THE DET PHENOTYPE 4, HEME OXYGENASE 6, GENOMES UNCOUPLED 2, ARABIDOPSIS THALIANA HEME OXYGENASE 1, Plant haem oxygenase (decyclizing) family protein (.1), Plant haem oxygenase (decyclizing) family protein (.2) Potri.014G034200 [exp] 229 / 6e-74 AT2G26550 305 / 3e-103 heme oxygenase 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030092 [exp] 390 / 7e-138 AT2G26670 407 / 1e-144 REVERSAL OF THE DET PHENOTYPE 4, HEME OXYGENASE 6, GENOMES UNCOUPLED 2, ARABIDOPSIS THALIANA HEME OXYGENASE 1, Plant haem oxygenase (decyclizing) family protein (.1), Plant haem oxygenase (decyclizing) family protein (.2) Lus10005718 [exp] 325 / 3e-112 AT2G26670 354 / 7e-124 REVERSAL OF THE DET PHENOTYPE 4, HEME OXYGENASE 6, GENOMES UNCOUPLED 2, ARABIDOPSIS THALIANA HEME OXYGENASE 1, Plant haem oxygenase (decyclizing) family protein (.1), Plant haem oxygenase (decyclizing) family protein (.2) Lus10021748 [exp] 179 / 6e-54 AT2G26550 288 / 2e-96 heme oxygenase 2 (.1.2.3) Lus10042666 [exp] 162 / 6e-48 AT2G26550 263 / 1e-86 heme oxygenase 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0230 [poplar] [flax] HO PF01126 [poplar] [flax] Heme_oxygenase Heme oxygenase
Representative CDS sequence Show only first row Show all	>Potri.018G131700.1 pacid=42801753 polypeptide=Potri.018G131700.1.p locus=Potri.018G131700 ID=Potri.018G131700.1.v4.1 annot-version=v4.1 ATGGCTTCTCTCACACCAATCTCTCAAACCCAGTTTTTATTTAACAAACCCCTCCTCAAATCCTCATCTCCTCGTCTTGAAACTTGTTTTCAATCAAGTT TTGTGTCGAAAAGGTTGTGTTTTCAATTGAAAGTTCCAGTCTTTGATAGAATGCCTTTGAAAAATACTGCTGTTGTGGCTGCTACAACGGCTGAGAAGCC TAAGAAGAGGTATCCAGGTGAGGCAAAAGGGTTTGTAGAGGAGATGAGGTTTGTGGCTATGAAGTTGCATACAAGGGAGCAAGCAAAGGAAGGGGAGAAG GAGGTGAAGGAGAAAGAAGAAGAAGCTGTCCGTAAGTGGGAGCCTTCTATTGATGGCTACTTGAAGTTTTTGGTTGATAGCAAGTTGGTTTATGATACCC TTGAAGAGATTGTTGAAAAAGCTTCTTTTCCTTTTTATGCTGAGTTCAGAAACACTGGACTGGAAAGGTCTGAAAAGTTGGCAAAAGATTTGGAGTGGTT CAAAGAACAAGGCTATAACATTCCCAAACCTTCTTCTCCTGGTGTTACCTATTCACAGATTCTGCAGGAATTGTCAGAGAAGGATCCTCAAGCATTTATT TGTCACTTCTACAACATATATTTTGCACACTCTGCTGGTGGTCAAATGATTGGGAGGAAGGTAGCTGAGCAGTTACTTAACAAAAAGGAGTTAGAATTCT ATAAATGGGATGGTGACCTTTCCCAGCTGTTGCAGAATGTCAGGGACAAGTTGAATAAAGTTGCGGAGGGCTGGACCAGAGAGGAGAAGGACCACTGTTT GGAAGAAACAGAGAAATCATTCAAGCATTCAGGGGAGATTCTTCGCCTAATATTATCATGA
AA sequence Show only first row Show all	>Potri.018G131700.1 pacid=42801753 polypeptide=Potri.018G131700.1.p locus=Potri.018G131700 ID=Potri.018G131700.1.v4.1 annot-version=v4.1 MASLTPISQTQFLFNKPLLKSSSPRLETCFQSSFVSKRLCFQLKVPVFDRMPLKNTAVVAATTAEKPKKRYPGEAKGFVEEMRFVAMKLHTREQAKEGEK EVKEKEEEAVRKWEPSIDGYLKFLVDSKLVYDTLEEIVEKASFPFYAEFRNTGLERSEKLAKDLEWFKEQGYNIPKPSSPGVTYSQILQELSEKDPQAFI CHFYNIYFAHSAGGQMIGRKVAEQLLNKKELEFYKWDGDLSQLLQNVRDKLNKVAEGWTREEKDHCLEETEKSFKHSGEILRLILS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Potri.018G131700 [exp]	0	1
AT4G10150			RING/U-box superfamily protein...		Potri.014G076800 [exp]	2.82	0.9320
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Potri.019G118400 [exp]	6.92	0.9224
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Potri.008G180700 [exp]	7.21	0.8611
AT3G53690			RING/U-box superfamily protein...		Potri.013G120300 [exp]	10.77	0.8384
AT5G23750			Remorin family protein (.1.2)		Potri.015G143600 [exp]	11.74	0.8684
AT3G47300		SELT	SELT-like protein precursor (....		Potri.001G253000 [exp]	11.83	0.8544
					Potri.015G073051 [exp]	12.00	0.9027
					Potri.001G410477 [exp]	12.96	0.9048
AT2G14095			unknown protein		Potri.017G050000 [exp]	14.49	0.8924
					Potri.005G084651 [exp]	14.89	0.9135

Compare expression of checked genes

Potri.018G131700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.