Plant FIBer expression Database

Potri.018G131800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41475 196 / 8e-65 Embryo-specific protein 3, (ATS3) (.1)
AT5G62200 169 / 4e-54 Embryo-specific protein 3, (ATS3) (.1)
AT5G62210 127 / 3e-37 Embryo-specific protein 3, (ATS3) (.1)
AT5G07190 110 / 9e-31 ATS3 seed gene 3 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G069800
[exp]
267 / 2e-92 AT2G41475 194 / 1e-63 Embryo-specific protein 3, (ATS3) (.1)
Potri.015G132700
[exp]
187 / 5e-61 AT5G62200 204 / 1e-67 Embryo-specific protein 3, (ATS3) (.1)
Potri.001G193500
[exp]
179 / 3e-58 AT5G62200 184 / 1e-59 Embryo-specific protein 3, (ATS3) (.1)
Potri.015G132900
[exp]
132 / 2e-39 AT5G62200 153 / 4e-47 Embryo-specific protein 3, (ATS3) (.1)
Potri.012G130900
[exp]
126 / 5e-37 AT5G62200 154 / 1e-47 Embryo-specific protein 3, (ATS3) (.1)
Potri.012G130800
[exp]
123 / 2e-36 AT5G62200 150 / 6e-47 Embryo-specific protein 3, (ATS3) (.1)
Potri.010G214400
[exp]
88 / 2e-22 AT5G62200 93 / 7e-24 Embryo-specific protein 3, (ATS3) (.1)
Potri.003G107100
[exp]
44 / 1e-05 AT4G39730 166 / 1e-52 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031684
[exp]
179 / 1e-57 AT5G62200 223 / 5e-75 Embryo-specific protein 3, (ATS3) (.1)
Lus10019416
[exp]
177 / 2e-57 AT2G41475 179 / 7e-58 Embryo-specific protein 3, (ATS3) (.1)
Lus10027387
[exp]
178 / 3e-57 AT5G62200 225 / 1e-75 Embryo-specific protein 3, (ATS3) (.1)
Lus10009020
[exp]
39 / 0.0005 AT2G22170 186 / 2e-60 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
Lus10043273
[exp]
0 / 1 AT2G41475 107 / 7e-32 Embryo-specific protein 3, (ATS3) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0321 PLAT PF01477 PLAT PLAT/LH2 domain
Representative CDS sequence
>Potri.018G131800.1 pacid=42800438 polypeptide=Potri.018G131800.1.p locus=Potri.018G131800 ID=Potri.018G131800.1.v4.1 annot-version=v4.1
ATGGTCAAACACCTCTCACTATTTGGGCTCGTCTTTGTCTTCTCCTCCATAACATTCCCACATTCTAGCTCTATCTCGCCTACCTTGCAGCCTCGTCCTC
TGAAATCCTTTTATCCCAAAAATATTCAGGCTGCAAAGAGCTGTCCATACGAACTTGTTATAAAGACCAGTTGCTCCTCTACAACTTACACCAGAGACAA
AATCAGCCTAGCTTTTGGTGATTCTTATGGCAATGAGGTCTATATCAAGAGACTTGACGATCCATCTTCAGGAACATTTGAGAGGTGTTCAACAGATTCA
TTCCAGATAAATGGACCATGTGTGGATGATGTTTGCTATCTATACATGCTGAGGACAGGAGCTGATGGCTGGAAACCTGAGAGCGTGAAGATCTACGGTT
CATATACCAAGACTGTGACATTCAACTACAACAAATTCCTTCCAAATGGGGTGTGGTATGGGTTTAATGTCTGTGGTCGTGCATCTGAGTCAGCAATTAT
GTAG
AA sequence
>Potri.018G131800.1 pacid=42800438 polypeptide=Potri.018G131800.1.p locus=Potri.018G131800 ID=Potri.018G131800.1.v4.1 annot-version=v4.1
MVKHLSLFGLVFVFSSITFPHSSSISPTLQPRPLKSFYPKNIQAAKSCPYELVIKTSCSSTTYTRDKISLAFGDSYGNEVYIKRLDDPSSGTFERCSTDS
FQINGPCVDDVCYLYMLRTGADGWKPESVKIYGSYTKTVTFNYNKFLPNGVWYGFNVCGRASESAIM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G41475 Embryo-specific protein 3, (AT... Potri.018G131800
[exp]
0 1
AT3G20390 endoribonuclease L-PSP family ... Potri.001G435700
[exp]
4.24 0.7846
AT3G06960 TGD4, PDE320 TRIGALACTOSYLDIACYLGLYCEROL 4,... Potri.010G002800
[exp]
6.92 0.7067
AT3G54560 HTA11 histone H2A 11 (.1) Potri.005G216600
[exp]
7.74 0.7504 HTA905
AT5G64140 RPS28 ribosomal protein S28 (.1) Potri.010G245400
[exp]
12.48 0.7676 Pt-RPS28.1
AT5G41340 ATUBC4, UBC4 ubiquitin conjugating enzyme 4... Potri.015G073400
[exp]
14.83 0.7589
AT5G47890 NADH-ubiquinone oxidoreductase... Potri.003G159100
[exp]
17.66 0.7337
AT3G17430 Nucleotide-sugar transporter f... Potri.008G214300
[exp]
30.98 0.6101
AT1G68260 Thioesterase superfamily prote... Potri.010G123102
[exp]
34.69 0.7334
AT2G30410 TFCA, KIS TUBULIN FOLDING FACTOR A, tubu... Potri.013G071100
[exp]
34.98 0.6926 TFCFA,Pt-KIS.1
AT4G35360 Uncharacterised conserved prot... Potri.004G207700
[exp]
36.41 0.6841

Potri.018G131800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.