Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67940 390 / 3e-138 ABCI17, AtSTAR1, ATNAP3 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) AT5G46540 141 / 1e-37 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT4G18050 134 / 2e-35 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1) AT4G25960 133 / 7e-35 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G27940 130 / 4e-34 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT1G28010 128 / 2e-33 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT3G62150 128 / 3e-33 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT1G10680 127 / 5e-33 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT2G47000 127 / 5e-33 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT3G28390 127 / 5e-33 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G139700 [exp] 138 / 1e-36 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139600 [exp] 137 / 3e-36 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G417600 [exp] 136 / 4e-36 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.002G019600 [exp] 135 / 8e-36 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.001G354900 [exp] 132 / 1e-34 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.003G094400 [exp] 131 / 3e-34 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.016G093600 [exp] 129 / 2e-33 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.006G123900 [exp] 129 / 2e-33 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.006G074400 [exp] 127 / 4e-33 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035453 [exp] 392 / 1e-138 AT1G67940 371 / 1e-130 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Lus10031069 [exp] 275 / 2e-94 AT1G67940 268 / 9e-92 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Lus10036616 [exp] 140 / 1e-38 AT3G28345 479 / 6e-159 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10035834 [exp] 139 / 5e-37 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039533 [exp] 135 / 1e-35 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10024162 [exp] 134 / 2e-35 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10004571 [exp] 134 / 3e-35 AT4G25960 1732 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10004583 [exp] 132 / 1e-34 AT4G18050 1660 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Lus10032911 [exp] 132 / 2e-34 AT3G28860 960 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10009989 [exp] 130 / 6e-34 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Potri.018G132000.1 pacid=42801091 polypeptide=Potri.018G132000.1.p locus=Potri.018G132000 ID=Potri.018G132000.1.v4.1 annot-version=v4.1 ATGTCTCTGACTTCACTTTACCAAGCTGTAGACATCTCTCCAGGTAACGGGAATCAGGAACCCCTGTTGGCTGTTAACGTAGAAGCAGCGAAAGATGGGG CAGAAGCCAAGTTTAGGATACGAAATTTGACTAAGGTTTCTGATGCTGGGGTGCCCATATTGAATGGAATCAATATGGACATACCTAAAGGGATGATTGT GGGGATTATAGGCCCTAGTGGAAGTGGAAAGTCGACGGTTTTGAGGGCACTTAACAGATTGTGGGAACCACCTTCTGGGACCGTGTTTCTTGATGGTCAT GATGTTAAGGATCTTGATGTTCTTGGCCATCGCAGGAAAGTTGGGATGCTCTTTCAGCTTCCTGCTCTTTTTGATGGCACGGTTGCAGATAACATACGAT ATGGACCACAATTGAAGGGGAAGAAGCTTACCGATGACGAGGTTTACAAGTTGCTTTCGCTTGCAGACCTTGATTCTTCCTTCTACAAAAAGACTAGCAA TGAGTTATCTGTCGGTCAAGCTCAAAGGGTTGCACTTGCTAGGACCCTAGCTAATGAACCAGAGGTTTTGCTACTGGATGAGCCAACTAGTGCATTGGAT CCAATTTCAACACAAAACATAGAGGATGTTCTTGTAAAATTAAAGAAACAACGAGGGCTGACAGTTGTTATTGTCTCTCACAGCATCAAACAGATCCAGA GGATTGCTGATGTAGTTTGCCTCCTTGTGAATGGAGAAATTGTTGAAGTTTTGAAACCTGATGACTTGTCTGAAGCCAAGCATCCCATGGCACAAAGGTT CCTTCAACTCGGTTCTTAA
AA sequence Show only first row Show all	>Potri.018G132000.1 pacid=42801091 polypeptide=Potri.018G132000.1.p locus=Potri.018G132000 ID=Potri.018G132000.1.v4.1 annot-version=v4.1 MSLTSLYQAVDISPGNGNQEPLLAVNVEAAKDGAEAKFRIRNLTKVSDAGVPILNGINMDIPKGMIVGIIGPSGSGKSTVLRALNRLWEPPSGTVFLDGH DVKDLDVLGHRRKVGMLFQLPALFDGTVADNIRYGPQLKGKKLTDDEVYKLLSLADLDSSFYKKTSNELSVGQAQRVALARTLANEPEVLLLDEPTSALD PISTQNIEDVLVKLKKQRGLTVVIVSHSIKQIQRIADVVCLLVNGEIVEVLKPDDLSEAKHPMAQRFLQLGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Potri.018G132000 [exp]	0	1
AT2G20830			transferases;folic acid bindin...		Potri.013G145600 [exp]	1.41	0.8262
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Potri.004G146000 [exp]	3.46	0.7889
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.005G077500 [exp]	6.00	0.8108
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Potri.003G224000 [exp]	8.36	0.7704
AT4G09760			Protein kinase superfamily pro...		Potri.002G063700 [exp]	11.40	0.7636
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Potri.003G112800 [exp]	15.16	0.7752
AT1G80530			Major facilitator superfamily ...		Potri.001G204700 [exp]	17.66	0.7391
					Potri.014G044700 [exp]	20.78	0.7277
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Potri.015G099000 [exp]	20.97	0.7241
AT2G02400			NAD(P)-binding Rossmann-fold s...		Potri.004G230900 [exp]	22.22	0.7272

Compare expression of checked genes

Potri.018G132000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.