Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06925 228 / 9e-78 ATSPLA2-ALPHA, PLA2-ALPHA PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) AT4G29470 79 / 1e-18 PLA2-DELTA phospholipase A2 delta, Phospholipase A2 family protein (.1) AT4G29460 77 / 6e-18 PLA2-GAMMA phospholipase A2 gamma, Phospholipase A2 family protein (.1) AT2G19690 75 / 2e-17 PLA2-BETA phospholipase A2-beta (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G070400 [exp] 245 / 1e-84 AT2G06925 216 / 4e-73 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) Potri.012G049101 [exp] 173 / 9e-57 AT2G06925 157 / 4e-51 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) Potri.006G149700 [exp] 76 / 5e-18 AT2G19690 153 / 2e-48 phospholipase A2-beta (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011960 [exp] 207 / 2e-69 AT2G06925 204 / 3e-68 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) Lus10028189 [exp] 75 / 1e-17 AT2G19690 149 / 4e-47 phospholipase A2-beta (.1.2) Lus10042892 [exp] 75 / 1e-17 AT4G29460 147 / 2e-45 phospholipase A2 gamma, Phospholipase A2 family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G132100.1 pacid=42800449 polypeptide=Potri.018G132100.1.p locus=Potri.018G132100 ID=Potri.018G132100.1.v4.1 annot-version=v4.1 ATGGCAAAGGAGTGCCGCAACTCATTGAAGCTAGCCCTTCTCGTTTCTTGTTCACTCCTTGTCCTTGCCTTTTCATCCTTCTCTGTCCAAGCACTCAACA TTGGAGTTCAAACAACTGATTCTGCTATCTCCCTGAGCAAAGACTGTAGCAGGAAATGCGAGTCAGAGTTCTGTTCAGTGCCACCGTTTTTGAGATATGG CAAGTATTGTGGGCTTCTATATAGCGGATGCCCGGGAGAGAAGCCTTGTGATGGTCTTGATGCTTGTTGTATGAAGCATGACGCCTGTGTGCAAGCAAAG AACAATGACTATCTAAGCCAAGAGTGCAGCCAAAACTTCATCAATTGCATGAACAATTTCAGAAACTCAGGTGCACATACATTTAAGGGGAACAAATGCC AAGTTGATGAAGTTATTGATGTTATATCTGTAGTCATGGAAGCTGCTTTGCTTGCTGGAAGAGCTCTTCATAAGCCATAG
AA sequence Show only first row Show all	>Potri.018G132100.1 pacid=42800449 polypeptide=Potri.018G132100.1.p locus=Potri.018G132100 ID=Potri.018G132100.1.v4.1 annot-version=v4.1 MAKECRNSLKLALLVSCSLLVLAFSSFSVQALNIGVQTTDSAISLSKDCSRKCESEFCSVPPFLRYGKYCGLLYSGCPGEKPCDGLDACCMKHDACVQAK NNDYLSQECSQNFINCMNNFRNSGAHTFKGNKCQVDEVIDVISVVMEAALLAGRALHKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Potri.018G132100 [exp]	0	1
AT5G41050			Pollen Ole e 1 allergen and ex...		Potri.001G326200 [exp]	4.47	0.8269
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.014G102200 [exp]	9.59	0.8278
AT1G79720			Eukaryotic aspartyl protease f...		Potri.003G185175 [exp]	15.65	0.7574
AT1G12845			unknown protein		Potri.017G060400 [exp]	18.70	0.7796
AT5G58520			Protein kinase superfamily pro...		Potri.009G075900 [exp]	19.33	0.7969
AT5G61310			Cytochrome c oxidase subunit V...		Potri.002G195901 [exp]	24.06	0.8263
AT5G07240		IQD24	IQ-domain 24 (.1)		Potri.012G139800 [exp]	25.63	0.7983
AT1G01225			NC domain-containing protein-r...		Potri.014G101300 [exp]	27.49	0.8196
AT1G13250		GATL3	galacturonosyltransferase-like...		Potri.010G129400 [exp]	30.59	0.7960
AT1G18210			Calcium-binding EF-hand family...		Potri.015G039500 [exp]	31.17	0.7757	Pt-CBL1.2

Compare expression of checked genes

Potri.018G132100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.