Plant FIBer expression Database

Pt-HKT1.2 (Potri.018G132200) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-HKT1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G10310 414 / 6e-140 ATHKT1, HKT1 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G147501
[exp]
192 / 1e-58 AT4G10310 150 / 2e-43 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030616
[exp]
399 / 2e-133 AT4G10310 399 / 4e-134 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Lus10030872
[exp]
371 / 2e-122 AT4G10310 390 / 2e-130 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Lus10040598
[exp]
343 / 6e-112 AT4G10310 374 / 3e-124 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Lus10026948
[exp]
243 / 2e-74 AT4G10310 306 / 5e-99 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0030 Ion_channel PF02386 TrkH Cation transport protein
Representative CDS sequence
>Potri.018G132200.1 pacid=42801171 polypeptide=Potri.018G132200.1.p locus=Potri.018G132200 ID=Potri.018G132200.1.v4.1 annot-version=v4.1
ATGAAGAGCTTTGCTTGTTTTGGTAAGAAATTAGAGCACCCTCGTAATTTCTTTTGCAACAAAGTAAGTTGCTTCCATAAATCTTCCATGTGTTCAATCC
GGTCCTTCCTTCGTGTATTAGTCTTTCAAATACACCCTTTTTGGGTTCAACTTGCTTATTTTGTAATCCTTTCCTTGGTTGGACATATGGCTTTGAAGGT
TTCAAAGCCAAGACCTGGCTCATTAAGGCCTGCAAGCCTTGACATCTTCTTTACTTCTGTTTCTTCGGCAACAGTTTCAAGCATGTCAACGGTGGAAATG
GAGGTCTTCTCTAACACCCAACTTATCATCATGACCATTTTGATGTTATTGGGTGGAGAGGTCTTCACTTCCATCCTTGGACTTTATCTGTCAAGGTTCA
AATTCTCTAAACATGAAACCAAGGAAAGTAGAGTCTCTTCTGTTTACCACAATCCTCCAAAACGTACCAACTTTCCAGGGCTAGAGATTGAGAAACCAAC
CAATGTAGACCTAGAATGTAATCTCAACTCTTTAGACAATGATCATAGTCTCAAGTTGAACTCACTTAAGAGCCTTGCTTGTGTGGCTTTGGGCTATTTT
TCAGTTGTTCACATAACTGGTTCTAGTTTAGTTGCTATGTATACAAGCCTTGTTCCTAGTGCAAGACAAGTCCTGGGCAGTAAAGGAATTAAGATTCAGA
CATTTTCTGTGTTCACCACAGTCTCTACCTTTTCCAACTGTGGTTTTGTGCCTACAAATGAGAACATGGTAGCTTTCAAGAAGAATTCAGGTCTCCTACT
CATTCTCATCCCTCAAATTCTTCTCGGAAACACATTATACCCATCATGCCTGCGATTTCTGATCTGGATTTTGGAGAAAATCACTAGGAAAGTGGAGTTC
AGATACATTCTGATGAATACTAGAGAGATGGGCTATGGCCATTTGCTATCCTTTTCTCATTCGTGCCTTCTCGCTATCACAGTCTCGGGGTTTATACTGG
TGCAGTTCATACTCTTTTGCTCCATGGAGTGGAATTCAGGAGCTATGGATGGTCTGAATCCCTATCAGAAGTTGATGGGTGCATTGTTTCAGGTTGTAAA
TTCAAGGCATACCGGTGAATCTATTGTCGATCTCTCCATCATCTCTCCAGCAATCTTGGTGCTCTTCGTGGTTATGATGTATCTCCCACCATACACTTCA
TTTATGCCGAAAAAGCAACAGGAAGAGGTTGATTCAGAAACTGGCCAAAAATGCAAAAACCAAAGGAAGTCTTTGGTTCAGTGCCTGTTGTTCTCACCTT
TATCTACCTTAGCCATCTTTGTGATTCTCATTTGCGTCTCAGAGAGAGAGAAGTTGAAGAAAGACCCCCTCAACTTCAACGTACTCAATATCACCATAGA
AGTCGTAAGTGCATATGGAAATGTCGGGTTCTCAACTGGCTATAGCTGCAAACGACAACTTGAACCTGATAGCTCGTGCAAGGATGCATGGTTTGGATTT
GTTGGAAGGTGGAGTAACATGGGAAAATTTATCCTCATCTTAGTAATGTTCTTCGGAAGGCTTAAGAAATTCAGCATCAATGGTGGTAAAGCTTGGAAGC
TATCCTAG
AA sequence
>Potri.018G132200.1 pacid=42801171 polypeptide=Potri.018G132200.1.p locus=Potri.018G132200 ID=Potri.018G132200.1.v4.1 annot-version=v4.1
MKSFACFGKKLEHPRNFFCNKVSCFHKSSMCSIRSFLRVLVFQIHPFWVQLAYFVILSLVGHMALKVSKPRPGSLRPASLDIFFTSVSSATVSSMSTVEM
EVFSNTQLIIMTILMLLGGEVFTSILGLYLSRFKFSKHETKESRVSSVYHNPPKRTNFPGLEIEKPTNVDLECNLNSLDNDHSLKLNSLKSLACVALGYF
SVVHITGSSLVAMYTSLVPSARQVLGSKGIKIQTFSVFTTVSTFSNCGFVPTNENMVAFKKNSGLLLILIPQILLGNTLYPSCLRFLIWILEKITRKVEF
RYILMNTREMGYGHLLSFSHSCLLAITVSGFILVQFILFCSMEWNSGAMDGLNPYQKLMGALFQVVNSRHTGESIVDLSIISPAILVLFVVMMYLPPYTS
FMPKKQQEEVDSETGQKCKNQRKSLVQCLLFSPLSTLAIFVILICVSEREKLKKDPLNFNVLNITIEVVSAYGNVGFSTGYSCKRQLEPDSSCKDAWFGF
VGRWSNMGKFILILVMFFGRLKKFSINGGKAWKLS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G10310 ATHKT1, HKT1 high-affinity K+ transporter 1... Potri.018G132200
[exp]
0 1 Pt-HKT1.2
AT2G35550 BBR_BPC BPC7, BBR/BPC7,... basic pentacysteine 7 (.1.2.3.... Potri.001G133900
[exp]
7.54 0.7664
AT1G02290 unknown protein Potri.014G109600
[exp]
15.09 0.7070
AT1G04520 PDLP2 plasmodesmata-located protein ... Potri.002G257300
[exp]
15.36 0.7540
AT1G32583 unknown protein Potri.015G101000
[exp]
23.32 0.7287
AT5G07050 nodulin MtN21 /EamA-like trans... Potri.003G192500
[exp]
24.73 0.6864
Potri.013G094050
[exp]
29.39 0.7020
AT5G10860 CBSX3 CBS domain containing protein ... Potri.017G000100
[exp]
30.21 0.6632
AT5G51550 EXL3 EXORDIUM like 3 (.1) Potri.015G129700
[exp]
31.14 0.7482
AT2G38290 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammo... Potri.006G102800
[exp]
33.15 0.7320 PtrAMT2-1,AMT2.1
AT5G20810 SAUR-like auxin-responsive pro... Potri.018G063400
[exp]
34.64 0.7239

Potri.018G132200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.