Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39930 1217 / 0 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) AT4G09020 592 / 0 ATISA3, ISA3 isoamylase 3 (.1) AT1G03310 315 / 2e-94 ATISA2, ISA2, DBE1, BE2 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) AT5G04360 82 / 1e-15 ATPU1 ,ATLDA PULLULANASE 1, limit dextrinase (.1) AT5G03650 70 / 4e-12 SBE2.2 starch branching enzyme 2.2 (.1) AT2G36390 65 / 2e-10 SBE2.1, BE3 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) AT3G20440 64 / 4e-10 EMB2729, BE1 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G070800 [exp] 1462 / 0 AT2G39930 1212 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.002G100900 [exp] 583 / 0 AT4G09020 1111 / 0.0 isoamylase 3 (.1) Potri.002G219900 [exp] 318 / 1e-95 AT1G03310 919 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Potri.010G229300 [exp] 82 / 1e-15 AT5G04360 1399 / 0.0 PULLULANASE 1, limit dextrinase (.1) Potri.006G115100 [exp] 69 / 7e-12 AT5G03650 1303 / 0.0 starch branching enzyme 2.2 (.1) Potri.001G359200 [exp] 69 / 8e-12 AT3G20440 1352 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Potri.005G251000 [exp] 49 / 2e-05 AT5G03650 828 / 0.0 starch branching enzyme 2.2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021586 [exp] 1271 / 0 AT2G39930 1211 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10017150 [exp] 778 / 0 AT2G39930 723 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10036474 [exp] 499 / 2e-165 AT4G09020 1005 / 0.0 isoamylase 3 (.1) Lus10017149 [exp] 317 / 2e-103 AT2G39930 296 / 3e-96 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10027999 [exp] 313 / 4e-94 AT1G03310 833 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Lus10000661 [exp] 309 / 1e-92 AT1G03310 848 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Lus10038675 [exp] 72 / 1e-12 AT5G04360 1200 / 0.0 PULLULANASE 1, limit dextrinase (.1) Lus10000912 [exp] 69 / 2e-11 AT3G20440 1315 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10023878 [exp] 67 / 5e-11 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10014382 [exp] 66 / 8e-11 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00128 [poplar] [flax] Alpha-amylase Alpha amylase, catalytic domain CL0369 [poplar] [flax] GHD PF02922 [poplar] [flax] CBM_48 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Representative CDS sequence Show only first row Show all	>Potri.018G132500.1 pacid=42800530 polypeptide=Potri.018G132500.1.p locus=Potri.018G132500 ID=Potri.018G132500.1.v4.1 annot-version=v4.1 ATGAACTTACTTCACTCTACTTCACACTCAGTACATGTCCTCAAATTCATTTCCCAGTTCCGAAGTACCCCAAAATTCTGTCTTTTGAAAAGAAATGTCA CTTCCAATTTAGAAAACTTTGGCAGTAACCTTTTTAGTAATTCAACGGCATCGATTTCCATTAAAGCAGCAAGAGATGGGGTGGATACAGCTGTGGTGGT GGAGGAGGAGGGGCCTAAATTGAGAAAGTTTCAGGTTTTTGAAGGCCATCCTTCACCATTTGGTGCCACAGTTCGTGATGGTGGTGTCAATTTCGCTATA TTTTCTGCCAATGCAGTTTCTGCTACTCTTTGCTTGATTTCTCTCTCTGATTTGCCTGAGAATAGAGTGACTGAGCAGTTTTTTCTTGATCCTTTGACCA ACAAGACTGGGGATGTTTGGCATGTGCATTTGAAAGGAGATTTTAAAGATATGCTCTATGGGTACAAGTTTGATGGCAGCTTTTCTCCTGAAGAAGGACA TTACTATGATCCCTCTCAGATTGTATTGGACCCGTATGCAAAAGCAGTCATTAGCAGAGGGGATTTTGGTGTTTTAGGGTCTGATGATAATTGCTGGCCT CAAATGGCCTGCATGATACCAACTGCAGATGATAAGTTTGATTGGGAGGGAGATTCACTGTTGAAGTATCCACAGAGAGATCTAATACTATATGAAATGC ATGTTCGTGGGTTTACACAGCATGAATCAAGTAGGACTGAATTCCCTGGTACATACCTTGGTGTAGTGGAGAAGCTTGGTCATTTGAAGGAACTTGGTGT CAACTGCATAGAGTTAATGCCATGCCATGAATTCAATGAGCTTGAGTATTACGATTACAATTCTGTCTTCGGTGATTATAAGGTTAATTTTTGGGGGTAT TCTACTGTCAATTACTTTTCTCCTATGACAAGATACTCATCTGCTGGCACACTTAACTGTGGCCATGATGCAATTAATGAATTCAAGCTTCTAGTTAGAG AAGCACATAAACGAGGAATTGAGGTGTTCATGGATGTTGTTTTCAATCACACAGCAGAAGGAAATGAGAGAGGTCCCATTCTATCTTTCAAAGGAGTTGA TAATAGTGTCTATTACATGCTTGCTCCTAAGGGAGAGTTCTATAATTATTCAGGTTGTGGGAACACATTCAATTGCAACCATCCTGTCGTGCGTCAATTT ATTTTGGACTGCTTAAGATATTGGGTGATTGAGATGCATGTAGATGGCTTCCGCTTTGACCTTGCTTCTATCATGACTCGAAGTAGTAGTCTCTGGGATG CAGTTAATGTTTTTGGGAGTCCAATAGAAGGCGACTTGGTGACAACTGGTACTCCTCTTGGCAGCCCACCATTGATTGAAATGATGAGTAATGATCCCAT ACTCCGTGATGTTAAGCTTATAGCTGAAGCATGGGATGCCGGAGGATTGTATCAAGTTGGCATGTTTCCTCATTGGCATATTTGGTCAGAATGGAATGGA AAGTATCGAGACATTGTGCGGCAGTTCATTAAGGGTACAGATGGTTTTTCTGGGGCTTTTGCTGAATGCCTTTGTGGGAGCCCAGGTTTATACCAGGAAG GAGGAAGGAAACCATGGAACAGCATTAACTTTGTATGTGCGCACGATGGTTTTACTTTGGCTGATTTAGTGACATATAACGAGAAGCATAACTTGGCAAA TGGAGAAGACAACAATGATGGAGAAAATCACAACAATAGCTGGAATTGTGGACAGGAGGGTGAATTAGCCAGCATTTCAGTGAAGAAATTGCGAAAACGG CAAATGCGAAATTTCTTTCTGTGTCTTATGGTTTCTCAAGGTGTTCCAATGATACACATGGGTGATGAATATGGTCACACAAAAGGGGGCAACAACAATA CATATTGCCATGACAACTATATCAACTATTTCTGGTGGGATAAGAAGGAAGAATCCTCATCAGACTTCTTTAGATTTTGCCGCCTCATGACCAAGTTCCG CCATGAATGTGAGTCCCTTGGCTTGAATGACTTCCCAACAGCAGAGAGGCTGCAATGGCATGGTCATGCTCCTGGAACACCAGATTGGTCAGAAACAAGC CGTTTTGTGGCCTTTACACTGATTGACTCGGTGAAGCGCGAGATCTACATCGCCTTCAATGCTAGCCATTTGTCAGTTACCATCACACTCCCAGAACGGC CAGCATACAGATGGGAGCCCCTGGTAGACACTGGCAAGCCTGCACCATTCGATTTCCTTTCTGGTGACTTACCTGAAAGGGACACAGCAATGAAACAGTA TTCTCACTTCCTGGAGGCCAATCTGTATCCTATGCTCAGTTATTCTTCTATCATCCTCGTACTCTTGCCCGTAGACAATGCTTAG
AA sequence Show only first row Show all	>Potri.018G132500.1 pacid=42800530 polypeptide=Potri.018G132500.1.p locus=Potri.018G132500 ID=Potri.018G132500.1.v4.1 annot-version=v4.1 MNLLHSTSHSVHVLKFISQFRSTPKFCLLKRNVTSNLENFGSNLFSNSTASISIKAARDGVDTAVVVEEEGPKLRKFQVFEGHPSPFGATVRDGGVNFAI FSANAVSATLCLISLSDLPENRVTEQFFLDPLTNKTGDVWHVHLKGDFKDMLYGYKFDGSFSPEEGHYYDPSQIVLDPYAKAVISRGDFGVLGSDDNCWP QMACMIPTADDKFDWEGDSLLKYPQRDLILYEMHVRGFTQHESSRTEFPGTYLGVVEKLGHLKELGVNCIELMPCHEFNELEYYDYNSVFGDYKVNFWGY STVNYFSPMTRYSSAGTLNCGHDAINEFKLLVREAHKRGIEVFMDVVFNHTAEGNERGPILSFKGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQF ILDCLRYWVIEMHVDGFRFDLASIMTRSSSLWDAVNVFGSPIEGDLVTTGTPLGSPPLIEMMSNDPILRDVKLIAEAWDAGGLYQVGMFPHWHIWSEWNG KYRDIVRQFIKGTDGFSGAFAECLCGSPGLYQEGGRKPWNSINFVCAHDGFTLADLVTYNEKHNLANGEDNNDGENHNNSWNCGQEGELASISVKKLRKR QMRNFFLCLMVSQGVPMIHMGDEYGHTKGGNNNTYCHDNYINYFWWDKKEESSSDFFRFCRLMTKFRHECESLGLNDFPTAERLQWHGHAPGTPDWSETS RFVAFTLIDSVKREIYIAFNASHLSVTITLPERPAYRWEPLVDTGKPAPFDFLSGDLPERDTAMKQYSHFLEANLYPMLSYSSIILVLLPVDNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Potri.018G132500 [exp]	0	1
AT5G49960			unknown protein		Potri.003G008800 [exp]	2.23	0.8287
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Potri.001G465500 [exp]	5.74	0.7806	HEN902,HEN1.2
AT5G38730			Tetratricopeptide repeat (TPR)...		Potri.017G108600 [exp]	10.95	0.7802
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Potri.010G226901 [exp]	13.74	0.7552
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Potri.011G109800 [exp]	15.32	0.7737
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.013G133000 [exp]	19.28	0.7734
AT5G08560			transducin family protein / WD...		Potri.008G002700 [exp]	20.39	0.7574
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G242200 [exp]	22.13	0.7487
AT1G05590		HEXO2, ATHEX3	BETA-HEXOSAMINIDASE 3, beta-he...		Potri.001G232800 [exp]	23.32	0.7103
AT4G02210			unknown protein		Potri.005G252500 [exp]	35.69	0.7661

Compare expression of checked genes

Potri.018G132500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.