Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56140 335 / 2e-105 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 332 / 3e-104 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 322 / 1e-100 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 317 / 6e-99 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 317 / 1e-98 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 315 / 3e-98 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G16670 298 / 4e-98 Protein kinase superfamily protein (.1) AT1G70520 304 / 3e-97 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT4G21390 300 / 6e-94 B120 S-locus lectin protein kinase family protein (.1) AT4G00960 287 / 7e-94 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G071300 [exp] 686 / 0 AT1G56140 334 / 3e-105 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G276600 [exp] 339 / 8e-111 AT1G70520 373 / 8e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.007G067900 [exp] 342 / 5e-108 AT1G56130 1290 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.017G141400 [exp] 331 / 2e-107 AT5G40380 390 / 6e-127 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.017G141300 [exp] 328 / 1e-105 AT5G40380 382 / 4e-123 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.001G082900 [exp] 332 / 2e-104 AT1G56140 1097 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G148000 [exp] 330 / 8e-104 AT1G56145 1063 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.010G109700 [exp] 311 / 8e-103 AT1G70740 523 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G132300 [exp] 310 / 1e-102 AT1G70740 499 / 6e-177 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010927 [exp] 570 / 0 AT1G56140 343 / 2e-107 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031401 [exp] 555 / 0 AT1G56140 337 / 4e-105 Leucine-rich repeat transmembrane protein kinase (.1) Lus10020688 [exp] 546 / 0 AT1G56140 323 / 1e-101 Leucine-rich repeat transmembrane protein kinase (.1) Lus10003711 [exp] 317 / 1e-105 AT1G70740 502 / 2e-178 Protein kinase superfamily protein (.1.2) Lus10001595 [exp] 317 / 5e-105 AT1G70740 518 / 0.0 Protein kinase superfamily protein (.1.2) Lus10031199 [exp] 332 / 3e-104 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010960 [exp] 319 / 2e-103 AT1G70520 373 / 2e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10042460 [exp] 306 / 2e-101 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10038940 [exp] 303 / 4e-100 AT4G23180 341 / 8e-112 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10026207 [exp] 301 / 5e-99 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.018G132900.1 pacid=42802042 polypeptide=Potri.018G132900.1.p locus=Potri.018G132900 ID=Potri.018G132900.1.v4.1 annot-version=v4.1 ATGGCACGCCGAGCGCTAGAAGTGACTCCTCCAGCACCTAATACGCTACATAGACAGAGCCCCTCATCAGAGAATTCTTCAGCCTTGTTGTTTGTCATTG GAGGGATGCTTGTGCTCGTAATATTGTTGATCCTTATCTTGCTCTTATGGAAATTTAACAAACCAGAAAAACTGAGGAAATCCCTGAAAAGAAATGGAAG TCTGACAGCAACCAAGGATTTCTGGAGTGGTAGCCTCCAAACGATAAGCTATTTCGACTTTCAGACACTGAAGAAAGCAACTAAGAATTTTCATCCTGGT AATCTACTCGGAAGAGGTGGATTTGGGCCTGTCTATCGGGGGAAGTTAAGTGATGGTAGAATGGTTGCAGTCAAGAAATTGTCCCTTGACAAATCTCAGC AAGGAGAATCAGAATTCCTTTCAGAGGTGAAGATGATTACTAGCATCCAACACAAGAACTTGGTTCGACTTCTAGGGTGTTGCTCAGATGGTCCACAAAG GTTACTCGTGTATGAATACATGAAGAATAGGAGCTTGGACCTCATAGTATATGGGAATGGTGATAAATTCCTGGATTGGGAAACCAGATTCCAAATAATA TTAGGCATTGCTCGAGGATTGCAATATCTACATGAGGATTCACACCTAAGAATTGTACACAGAGATATAAAAGCAAGCAACATTCTTCTTGATGTCAAAT TCCAGCCAAGGATTAGTGATTTTGGGCTGGCTAGGTTCTTCCCTGAAGATCAAGCTTATCTCAGCACTACATTTGCAGGAACTTTAGGTTACACAGCTCC TGAGTATGCCATCAGAGGGGAATTGTCTGAAAAGGCAGACATTTATAGCTTTGGAGTGCTTGTGCTTGAAATTATTAGCTGCAGGAAAAACACAGATCTT AGGTTACCATCAGAAATGCAATATCTTCCTGAATATGCATGGAAATTATATGAGAGGTCAAGTGTGATTGATCTGGTAGATCCCAAATTGCGAGAAGATG GATTTATGGAGAAAGATGTCTTGCAAGTAATCCATGTAGCTTTCTTATGCCTTCAGCCTCTTGCTAACCTGAGGCCTCCAATGTCCAAAATTGTAGCCCT GTTAACATGCAAAGTTGAAATGGTCGGGACACCTATGAGGCCAGCATTCTTGGAAAGAAGGCGTAAAACGGATGAAAAGCTATCATGGGATACCATATCT GAGGTTTTTTCTTCTCCTTTGCATAGCGAGTCCCCTTCGTTGCCTCGACAACAAAATTAA
AA sequence Show only first row Show all	>Potri.018G132900.1 pacid=42802042 polypeptide=Potri.018G132900.1.p locus=Potri.018G132900 ID=Potri.018G132900.1.v4.1 annot-version=v4.1 MARRALEVTPPAPNTLHRQSPSSENSSALLFVIGGMLVLVILLILILLLWKFNKPEKLRKSLKRNGSLTATKDFWSGSLQTISYFDFQTLKKATKNFHPG NLLGRGGFGPVYRGKLSDGRMVAVKKLSLDKSQQGESEFLSEVKMITSIQHKNLVRLLGCCSDGPQRLLVYEYMKNRSLDLIVYGNGDKFLDWETRFQII LGIARGLQYLHEDSHLRIVHRDIKASNILLDVKFQPRISDFGLARFFPEDQAYLSTTFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIISCRKNTDL RLPSEMQYLPEYAWKLYERSSVIDLVDPKLREDGFMEKDVLQVIHVAFLCLQPLANLRPPMSKIVALLTCKVEMVGTPMRPAFLERRRKTDEKLSWDTIS EVFSSPLHSESPSLPRQQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56140			Leucine-rich repeat transmembr...		Potri.018G132900 [exp]	0	1
AT1G16250			Galactose oxidase/kelch repeat...		Potri.011G046100 [exp]	1.41	0.9928
AT1G79620			Leucine-rich repeat protein ki...		Potri.013G053001 [exp]	2.44	0.9919
AT1G09560		GLP5	germin-like protein 5 (.1)		Potri.009G157100 [exp]	3.00	0.9895	Pt-GER2.21
					Potri.006G180650 [exp]	5.65	0.9793
					Potri.001G151150 [exp]	7.34	0.9789
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Potri.001G142900 [exp]	7.41	0.9784
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.013G157100 [exp]	7.74	0.9884
AT4G08250	GRAS		GRAS family transcription fact...		Potri.019G007100 [exp]	13.26	0.9687
					Potri.015G120600 [exp]	14.28	0.9610
AT1G16250			Galactose oxidase/kelch repeat...		Potri.004G037400 [exp]	14.49	0.9804

Compare expression of checked genes

Potri.018G132900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.