Plant FIBer expression Database

Potri.018G132951 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G24225 37 / 0.0002 ESR19, CLE19, ATCLE19 EMBRYO SURROUNDING REGION 19, CLAVATA3/ESR-RELATED 19 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G071401
[exp]
78 / 3e-20 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.018G132951.1 pacid=42800973 polypeptide=Potri.018G132951.1.p locus=Potri.018G132951 ID=Potri.018G132951.1.v4.1 annot-version=v4.1
ATGAGAGTATTAGCTGTTCTTGTTATGGCATTATCCCTTCTGATTTTTGGATCTATTGGCCGGTCTGATGCAGTGCCAAAAACAACTTTTTTATCTCCTG
TTGATGGTTCCAACAAGAAGAAAAGTTCATCAAATATGTCATCATCATCATCATCACTTGAAGCTGTCAACACCTTGTTCTCTAACTCCAGCAAGAACAA
GAACATTACTTTGGATGAAATGAGAGTTGTTCCTACAGGTCCAAATCCTTTACACAACAGGTCAAGAGCATCAGCATACACGCGGGCAAATCTTGGCAAA
TATATGTATACATGA
AA sequence
>Potri.018G132951.1 pacid=42800973 polypeptide=Potri.018G132951.1.p locus=Potri.018G132951 ID=Potri.018G132951.1.v4.1 annot-version=v4.1
MRVLAVLVMALSLLIFGSIGRSDAVPKTTFLSPVDGSNKKKSSSNMSSSSSSLEAVNTLFSNSSKNKNITLDEMRVVPTGPNPLHNRSRASAYTRANLGK
YMYT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G132951
[exp]
0 1
AT3G50390 Transducin/WD40 repeat-like su... Potri.006G239600
[exp]
2.00 0.9851
AT5G45670 GDSL-like Lipase/Acylhydrolase... Potri.011G076400
[exp]
3.00 0.9828
AT5G62360 Plant invertase/pectin methyle... Potri.015G128100
[exp]
3.87 0.9750
AT5G09970 CYP78A7 "cytochrome P450, family 78, s... Potri.002G060900
[exp]
4.47 0.9771
AT2G45260 Plant protein of unknown funct... Potri.013G155400
[exp]
9.48 0.9650
AT4G09530 SAUR-like auxin-responsive pro... Potri.013G111000
[exp]
9.79 0.9361
AT1G71691 GDSL-like Lipase/Acylhydrolase... Potri.013G102500
[exp]
12.24 0.9738
AT1G69940 ATPPME1 Pectin lyase-like superfamily ... Potri.015G110700
[exp]
13.26 0.9573
AT1G73680 ALPHADOX2 ,ALPH... alpha dioxygenase (.1.2) Potri.012G049500
[exp]
13.74 0.9727
AT4G14723 EPFL4, CLL2 epidermal patterning factor li... Potri.008G157300
[exp]
13.96 0.9587

Potri.018G132951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.