Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20590 607 / 0 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT1G60790 415 / 2e-140 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT3G12060 404 / 9e-136 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G06700 402 / 1e-134 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G62390 398 / 1e-134 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G49340 366 / 2e-122 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT3G06080 331 / 1e-108 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G19160 320 / 3e-104 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT5G06230 293 / 5e-95 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT1G48880 295 / 7e-95 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G071500 [exp] 863 / 0 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.002G195800 [exp] 410 / 2e-138 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.010G043300 [exp] 407 / 3e-137 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.006G193900 [exp] 405 / 2e-135 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 400 / 2e-133 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.008G108500 [exp] 394 / 3e-133 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.T171301 [exp] 394 / 4e-133 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.001G010900 [exp] 383 / 8e-128 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.002G054400 [exp] 323 / 2e-105 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011932 [exp] 554 / 0 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 546 / 0 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10021066 [exp] 412 / 7e-138 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10013035 [exp] 406 / 1e-136 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10002430 [exp] 375 / 2e-125 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10029126 [exp] 373 / 3e-124 AT1G60790 527 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10037726 [exp] 337 / 9e-111 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Lus10041219 [exp] 313 / 6e-102 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10034041 [exp] 313 / 1e-101 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10003734 [exp] 307 / 2e-99 AT3G06080 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.018G133000.2 pacid=42802144 polypeptide=Potri.018G133000.2.p locus=Potri.018G133000 ID=Potri.018G133000.2.v4.1 annot-version=v4.1 ATGGCAAATTCCTCTTCTTTCAACAACCGCAACGCTGTAATAACCTCAATATTCCTTGTCTCATTCCTTTTAACAGTTTTCCTCTTCAACAAACGAGCTC TTGAGCCCTCTCTCTTTTTCTACAGAGATTTCTTTCCACAAAGAGCTACTGCCCCCCTCACTTCCTCCCCCAATTTCACCCTTCCTGACTCAGAACAACC AGTTGACTCAGCGACTAACCAACCCGTTTCTCGAAATGAGACTATTGAGTCCAAAACTGGTGATGATTCAACTAAAGTGGAGGTGTCTGCTGAAAATGAG AAAGACAACCCAGATGGGGATTTTGAGTCTGGTGGGGGTTCGAGTGATAACTCAACAAATGTGGAGGTTTCTAGTGAAAACGAGAAGGACCCAGATGGGA ATTTGGAGACTGGTGCGGATTTGGATGGTAATGATGATGATAAGTTGATGGCGAGTTTGAAAAGTTGTGATCTTTATATGGGTACTTGGGTGAAAGATGA AGAGTATCCGATTTATGAAGCTGGTTCTTGTCCTTATGTTGATGAGGCCTTTGATTGCCAAGGCAATGGAAGGAAAGATTCTGATTATCTTAAATGGCGT TGGAAGCCTTATGATTGTGATCTTCCAAGGTTTAATGCAACAGACTTCTTGACAAGATTGAGAGGGAAGAGGCTCATGCTAGTTGGAGACTCCATGAATC GAAATCAGTTTGAATCAATGCTATGTCTCCTCCGTGAAGGCCTGCCTGATAAGAGCAAAATGTTTGAGATCCATGGCAACAAGATAACGAAGGGAAGAGG CTACTATGTTTTCAAATTTGTGGTGCTTGGGCAGGATTATGAGTGTACTGTGGAATTTGTGAGGTCACATTTCCTTGTGAAAGAAGGGGTGCACATAAAC GCACAAGGAAGCTCAAATCCAACTTTATCTATAGATGTAATTGACAAGACAGCTGGCCGATGGAAGAGGGCTGACATTCTGGTTTTTAATACTGGGCACT GGTGGGCTCATGGAAAGACAGCTCGAGGGAAAAATTACTATAAAGAAGGTGACTATCTCTATCCAAAGTTTGATGCAGTTGAGGCTTACAGAAGGGCTCT GAAGACCTGGGCAAAATGGATTGACCAAAATGTGGATCCGAAAAAGCAGTTAGTGTTCTATCGTGGATACTCCTCAGCCCATTTCAGAGGTGGGGACTGG GATTCAGGAGGGACATGCAATGGGGAGACTGAACCAGTTTTAAGTGGGGCAATTCTCAACAACTATCCTGTCAAAATGAAGATAGTAGAGGAGGTAATCC AGGAAATGAAGAATCCAGTTACACTACTAAATGTGACAAGGTTGACCAATTTTCGAAAGGATGGACATCCATCAATCTTTGGCAAGAACGCAACTGCAGG GATAAAGGTTTCAACAAGGCGCCAAGACTGCAGCCATTGGTGTGTTCCAGGCGTCCCTGATGCATGGAATGAGCTGATATATGCAACTTTGCTTCAACAA ACAGTTTCCAAGAGTTGA
AA sequence Show only first row Show all	>Potri.018G133000.2 pacid=42802144 polypeptide=Potri.018G133000.2.p locus=Potri.018G133000 ID=Potri.018G133000.2.v4.1 annot-version=v4.1 MANSSSFNNRNAVITSIFLVSFLLTVFLFNKRALEPSLFFYRDFFPQRATAPLTSSPNFTLPDSEQPVDSATNQPVSRNETIESKTGDDSTKVEVSAENE KDNPDGDFESGGGSSDNSTNVEVSSENEKDPDGNLETGADLDGNDDDKLMASLKSCDLYMGTWVKDEEYPIYEAGSCPYVDEAFDCQGNGRKDSDYLKWR WKPYDCDLPRFNATDFLTRLRGKRLMLVGDSMNRNQFESMLCLLREGLPDKSKMFEIHGNKITKGRGYYVFKFVVLGQDYECTVEFVRSHFLVKEGVHIN AQGSSNPTLSIDVIDKTAGRWKRADILVFNTGHWWAHGKTARGKNYYKEGDYLYPKFDAVEAYRRALKTWAKWIDQNVDPKKQLVFYRGYSSAHFRGGDW DSGGTCNGETEPVLSGAILNNYPVKMKIVEEVIQEMKNPVTLLNVTRLTNFRKDGHPSIFGKNATAGIKVSTRRQDCSHWCVPGVPDAWNELIYATLLQQ TVSKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Potri.018G133000 [exp]	0	1
AT4G01220		MGP4	male gametophyte defective 4, ...		Potri.002G166000 [exp]	6.00	0.7674
AT2G27260			Late embryogenesis abundant (L...		Potri.001G218300 [exp]	16.73	0.7403
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Potri.005G014000 [exp]	16.91	0.7069
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.007G100000 [exp]	17.02	0.7362
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Potri.015G041700 [exp]	17.66	0.7265	PP2.5
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Potri.012G110700 [exp]	18.49	0.6448
AT4G22560			unknown protein		Potri.003G111800 [exp]	19.20	0.6947
AT5G66130		ATRAD17	RADIATION SENSITIVE 17 (.1)		Potri.005G111000 [exp]	21.02	0.6354
AT4G19900			alpha 1,4-glycosyltransferase ...		Potri.015G122200 [exp]	21.90	0.7109
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Potri.004G176600 [exp]	28.14	0.7403

Compare expression of checked genes

Potri.018G133000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.