Plant FIBer expression Database

Potri.018G133300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G071801
[exp]
76 / 6e-17 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004294
[exp]
691 / 0 ND /
Lus10019222
[exp]
156 / 5e-44 ND /
Lus10019221
[exp]
141 / 3e-37 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0029 Cupin PF08007 Cupin_4 Cupin superfamily protein
Representative CDS sequence
>Potri.018G133300.1 pacid=42800313 polypeptide=Potri.018G133300.1.p locus=Potri.018G133300 ID=Potri.018G133300.1.v4.1 annot-version=v4.1
ATGGAAATGGAGGAGCAGCAAGAAAACAGCAAGAAGAGAACCCGCAAAAGAAAAACAACGTCCCTTCTCTCCCTTAACAACACTACAACCATCTTCCCTC
TCTTACTAGCCGCAGCAACCCAACTCTCCGATTCTCAAAAAAACACACCCAACAATAGTTCCGAAATCTTAGTCAAGAAATGCTTAACCAAATTACACCA
ATCTATCCTTTCAAACAACCAAACATTTCCCATTTCTGTTCTCTCTCTGTTTCCCATCCTCATGAGCTCCAAGTGTGCTGGAATTGCGTGTCGAAGTGCG
GAGATTGTTGGGTTGGCGTCACTGGTGTCATTGGAAATGAATGAACTGGTTGCTTTGGATGAGGGGATAGTGAAAGGATTGATCTTGATGTTAGGGAGTG
GAAAAAGGAAAGTTTCAGTGGCTGCTTGTAATGCCGTTTTGGATTTGTCTTCTACTTTGATTGGAAGACGAAGTTTACTGGAATTCTCAGCCTTAGAATG
GTTTATTTTTGGATTCCTTCAGGTTCCTGCATCTTCAATAGTGGTTTCTTTATGTAATGAAGATGAGAGAAGTGTTGCCTGTGCCAGGATAGCTTTTAAA
GAAGATGGGCATGCAGTGTCAATTCTTCACGCTGCTATTACTTTAATTAATACTTGCAACGTTGAGCAATTGGAAAAGATCCCATGGAAGCTATCCGAAA
AATTCTTGGTTTCTTTGAAAACATTGTGGGAAAAGGTGCATGATCAGATGTTACTTGGCAATGCTTGGTCATCACGTCGAGATAGGGATTTAAATTTGAG
CAACGTTACGGTTAACAGCCTGGCAGAAAGTATTTTTAGGTTATCTATTAATGTCAGCGAATTTGTGATTCCCTTGCCATCTGTGTTATTTGACAGAATG
ATCTTCGGTTGGAGTGATCTAGGTTTTGAAAATTTCATGTTACATCACTGGGAATCATCTCCTTCTCTTGTAAGAAGGCTTTCAGGGTCCTTAACTGAGG
AAAATGACATTTTAAGCTCATTTGCAGAGTCTCTAAACTGTAAAGAACCATGTCCTACCTTTGTTGCATCCATTCTTCAAAGTTTTATTTCATGTGTACC
TATTGCTTCAGATGAACTGAACATCATAAGTTTCCTAGAGGAGGTGAGAAGTGAATTGGGCTGTCCTATAATATATGACCAGGACATACGGGTACTAAGA
ACAGAGCAGCCTTCAAAAAAAGAGGTGCATTTCTTTCAAAAGAAAGTTGATCCATGCTGCTTTAAGAAACTTGCTTTCAATAACGTGGATATTATGAAAT
GTGAAGAAGCATTTAAAGAGGGCTATACAATCGCGCTCCGTGGTGTTGAGTTCCGCTTTGCAAGTATTGCAGCTGTTGCAGATGCTTTAGCATCTTTGTT
TGGTCAACCATCAGTAGGTGCCAATATATACTTGACACCACCTAATTCTCAGGGCTTGGCTCGTCACTGTGATGACCACTGCGTGTTTGTATGCCAACTC
TTTGGGACTAAGCAATGGACAATCTATCCACGACCAAATTTGCAGCTACCTCGCTTGTATGATCCTTTTGATAGAGAACATTGTCTTGGGGAACAGAATT
CTTTAGCTGAATGTAGAAAGTTCCTGTTGAGGGAAGGTGACATCTTGTATATTCCAAGAGGCTTTCCTCATGAGGCATGTACACATGATGATGGTTCTAG
TGATTTAGCCAGATTTTCCTTACATGTCACTTTTGGTGTTGAGGTGGAACCTCCATTTGAGTGGGAGGGCTTTGCACATGTTGCACTCCATCGCTGGTAC
AAGACCCAAAAACAGCTGCATGGAGCTTCAGATGAGCCATTGTCTGGAATTCTGGACCTCATGTCTGTAAATCTGTTGCATCTAATGATTGAATTAATTG
GGGCCTCTGATTCTACGTTGCGGAAAGCTTCCTTAGTTGGTGCTCTCGTTTTGCCTTTGGAGATTGATGATTGGTTATATTTGAACCAGAAAACCACTTT
CAACCACATAATTGATCAAATTAACAAGGCATCAATGTTCTTGGAAGTATTCAGGAGTGTGGAAGTAGCTATTGGAAAAAATGAAGATCCCTTTCATCGA
ATGAGGTGGCTCAGGCTTCTCTATCAGGAGACAGAAACAATTCAAGAACATGATTGGAATGTACCTCTCGGTGAATTTCAAAATTTATTTCCTTCATGTG
CTCAACACAAGGACATGACAGAAGCTGCATTCATGCAAGTTAAATCTAAGTTATGTGATGAAGTGTTATTTGAGGATGTGATTGATAGCTATAAACTACT
ACTCGAGAAGTATAAGAAAGCCAGAAAGCAATATATGAATGGAATGCTCTCGCTACATTGCAGTGGATTTCGTTGA
AA sequence
>Potri.018G133300.1 pacid=42800313 polypeptide=Potri.018G133300.1.p locus=Potri.018G133300 ID=Potri.018G133300.1.v4.1 annot-version=v4.1
MEMEEQQENSKKRTRKRKTTSLLSLNNTTTIFPLLLAAATQLSDSQKNTPNNSSEILVKKCLTKLHQSILSNNQTFPISVLSLFPILMSSKCAGIACRSA
EIVGLASLVSLEMNELVALDEGIVKGLILMLGSGKRKVSVAACNAVLDLSSTLIGRRSLLEFSALEWFIFGFLQVPASSIVVSLCNEDERSVACARIAFK
EDGHAVSILHAAITLINTCNVEQLEKIPWKLSEKFLVSLKTLWEKVHDQMLLGNAWSSRRDRDLNLSNVTVNSLAESIFRLSINVSEFVIPLPSVLFDRM
IFGWSDLGFENFMLHHWESSPSLVRRLSGSLTEENDILSSFAESLNCKEPCPTFVASILQSFISCVPIASDELNIISFLEEVRSELGCPIIYDQDIRVLR
TEQPSKKEVHFFQKKVDPCCFKKLAFNNVDIMKCEEAFKEGYTIALRGVEFRFASIAAVADALASLFGQPSVGANIYLTPPNSQGLARHCDDHCVFVCQL
FGTKQWTIYPRPNLQLPRLYDPFDREHCLGEQNSLAECRKFLLREGDILYIPRGFPHEACTHDDGSSDLARFSLHVTFGVEVEPPFEWEGFAHVALHRWY
KTQKQLHGASDEPLSGILDLMSVNLLHLMIELIGASDSTLRKASLVGALVLPLEIDDWLYLNQKTTFNHIIDQINKASMFLEVFRSVEVAIGKNEDPFHR
MRWLRLLYQETETIQEHDWNVPLGEFQNLFPSCAQHKDMTEAAFMQVKSKLCDEVLFEDVIDSYKLLLEKYKKARKQYMNGMLSLHCSGFR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G133300
[exp]
0 1
AT2G22410 SLO1 SLOW GROWTH 1 (.1) Potri.004G217900
[exp]
2.23 0.8701
AT4G13650 Pentatricopeptide repeat (PPR)... Potri.009G035100
[exp]
4.47 0.8843
AT2G39620 Pentatricopeptide repeat (PPR)... Potri.008G052200
[exp]
4.69 0.8858
AT4G08210 Pentatricopeptide repeat (PPR-... Potri.002G087400
[exp]
6.00 0.8803
AT3G55510 RBL REBELOTE, Noc2p family (.1) Potri.008G043400
[exp]
8.71 0.8754
AT1G71420 Tetratricopeptide repeat (TPR)... Potri.013G098800
[exp]
10.39 0.8665
AT2G41020 WW domain-containing protein (... Potri.006G032200
[exp]
11.22 0.8054
AT1G26500 Pentatricopeptide repeat (PPR)... Potri.016G086100
[exp]
12.96 0.8435
AT4G01570 Tetratricopeptide repeat (TPR)... Potri.002G183100
[exp]
17.14 0.8483
AT3G23330 Tetratricopeptide repeat (TPR)... Potri.001G186500
[exp]
21.81 0.8384

Potri.018G133300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.