Plant FIBer expression Database

Potri.018G133700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G55600 287 / 1e-98 Membrane fusion protein Use1 (.1)
AT1G54110 271 / 2e-92 Membrane fusion protein Use1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041305
[exp]
289 / 2e-99 AT3G55600 324 / 3e-113 Membrane fusion protein Use1 (.1)
Lus10037405
[exp]
288 / 2e-98 AT3G55600 321 / 2e-111 Membrane fusion protein Use1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09753 Use1 Membrane fusion protein Use1
Representative CDS sequence
>Potri.018G133700.1 pacid=42800785 polypeptide=Potri.018G133700.1.p locus=Potri.018G133700 ID=Potri.018G133700.1.v4.1 annot-version=v4.1
ATGGGAATCAGCAAAACAGAAATAAACTTAAGAAGATTACTCTCATCTGCTCCTCAACAACAAAATCAAGCAAAACTCGTCCATTATATTGCTACTTTAA
GAGAGCAATTGGAACAATTGGCTGAAGAGAGAACGGCTGATGAATTACCAAGAGTCTCGAAGGCGGTGTTGAACGATTATTCGGAGAAGATTGAGGCTAT
TGCTTCTAAATTAGTTAACTCATTGCCTGAAATTGAGGCTCCCCAGGAAACTTTTGCTGGGGATTCGGGAAAAGAAAGTCCCAAGGCAGATGGAGGAGAT
CAGATAGCACCTTCTCCAGGCTTGAGGAGGAGATTTGCGCCAGTGTCAAATTTTGAAGACAAAACTCGTGACTCTATTAAGGCAGATGCATCAGCTCCTG
TTAAACTGGATGCTGCAGCACAAGCACACATTGAAAAGCACAGAAAGCTTCAAGATGACTTGACTGATGAAATGGTTGGATTGGCACAACAACTAAAAGA
GAGTAGTCTCTTGATGAGCCAGTCTTTACAAAACACTGAAAAGATACTAGATTCTACAGAGCAGGCTGTTGAGCAGAGCTTGGCCAGCACTGGTCATGCC
AATGTCCGGACCATGGACATATACTCAAAGACATCAAAGACCACGTGCTTCACATGGCTTTTGATGTTTCTAATGACATGTATTTTCATCATGGTTGTCC
TCCTGATTCGTGTCACCTGA
AA sequence
>Potri.018G133700.1 pacid=42800785 polypeptide=Potri.018G133700.1.p locus=Potri.018G133700 ID=Potri.018G133700.1.v4.1 annot-version=v4.1
MGISKTEINLRRLLSSAPQQQNQAKLVHYIATLREQLEQLAEERTADELPRVSKAVLNDYSEKIEAIASKLVNSLPEIEAPQETFAGDSGKESPKADGGD
QIAPSPGLRRRFAPVSNFEDKTRDSIKADASAPVKLDAAAQAHIEKHRKLQDDLTDEMVGLAQQLKESSLLMSQSLQNTEKILDSTEQAVEQSLASTGHA
NVRTMDIYSKTSKTTCFTWLLMFLMTCIFIMVVLLIRVT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G55600 Membrane fusion protein Use1 (... Potri.018G133700
[exp]
0 1
AT5G35620 eIFiso4E, EIF(I... LOSS OF SUSCEPTIBILITY TO POTY... Potri.008G171100
[exp]
1.73 0.7213 Pt-EIF(ISO)4E.2
AT5G10780 unknown protein Potri.018G016800
[exp]
7.93 0.6169
AT3G58680 MBF1B, ATMBF1B multiprotein bridging factor 1... Potri.011G109500
[exp]
8.00 0.6648
AT1G55805 BolA-like family protein (.1) Potri.012G036800
[exp]
8.48 0.7192
AT1G08780 PFD4, PDF4, AIP... PREFOLDIN 4, ABI3-interacting ... Potri.005G054500
[exp]
8.66 0.7017
AT2G45640 ATSAP18, HDA19 SIN3 ASSOCIATED POLYPEPTIDE 18... Potri.003G119300
[exp]
11.48 0.6306
AT1G75950 UIP1, SKP1A, AT... UFO INTERACTING PROTEIN 1, ARA... Potri.005G243100
[exp]
14.31 0.6595 Pt-SKP1.3
AT1G61700 RNA polymerases N / 8 kDa subu... Potri.003G102900
[exp]
15.49 0.6101
AT4G23630 RTNLB1, BTI1 Reticulan like protein B1, VIR... Potri.003G133600
[exp]
17.29 0.6084
AT2G30050 transducin family protein / WD... Potri.010G100400
[exp]
18.16 0.6131

Potri.018G133700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.