Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36110 526 / 0 CYP716A1 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) AT5G36140 315 / 6e-105 CYP716A2 "cytochrome P450, family 716, subfamily A, polypeptide 2", cytochrome P450, family 716, subfamily A, polypeptide 2 (.1) AT2G42850 258 / 2e-80 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT3G19270 222 / 6e-67 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT5G36130 210 / 1e-66 Cytochrome P450 superfamily protein (.1) AT5G45340 214 / 4e-64 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT2G29090 213 / 3e-63 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT4G19230 208 / 2e-61 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT2G32440 206 / 8e-61 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT1G05160 187 / 2e-53 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G134000 [exp] 863 / 0 AT5G36110 559 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.018G149300 [exp] 675 / 0 AT5G36110 585 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.018G134300 [exp] 618 / 0 AT5G36110 526 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.007G002400 [exp] 610 / 0 AT5G36110 585 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.006G085500 [exp] 609 / 0 AT5G36110 573 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.018G134700 [exp] 593 / 0 AT5G36110 474 / 7e-165 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.013G106200 [exp] 515 / 2e-180 AT5G36110 492 / 2e-171 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.013G106100 [exp] 496 / 3e-173 AT5G36110 470 / 4e-163 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.019G078600 [exp] 490 / 2e-171 AT5G36110 476 / 2e-165 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040055 [exp] 283 / 6e-90 AT5G36110 318 / 7e-104 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Lus10010940 [exp] 262 / 7e-82 AT2G42850 571 / 0.0 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) Lus10042652 [exp] 210 / 4e-62 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10021725 [exp] 208 / 6e-62 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10040193 [exp] 204 / 1e-59 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10033308 [exp] 202 / 4e-59 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10034768 [exp] 200 / 1e-58 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10035685 [exp] 200 / 2e-58 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10018898 [exp] 196 / 8e-57 AT5G45340 301 / 3e-97 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10016515 [exp] 196 / 9e-57 AT2G29090 554 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.018G133901.1 pacid=42801369 polypeptide=Potri.018G133901.1.p locus=Potri.018G133901 ID=Potri.018G133901.1.v4.1 annot-version=v4.1 ATGGAGACTCTCTATTTCATCCTTCTCCTCTTTGTCTCCATCATTCTCTCCCTCATTGCCATAATTTACAAGCACAGATACCAGGATAAACTCCCTAACC TTCCTCCAGGCAATCTAGGCCTCCCTTTTGTGGGAGAGAGCCTAGATTTCCTGTCAAAAGGATGGAAAGGTTGCCCAGAAAACTTCATATTCGATCGCAT TTGGAAATATTCATCGGAAACATTCAAAACAAATCTTTTTCTTCAGCCTGTAGTGATGTTAAATGGTGTTGCGGGAAACAAGTTCTTATTCTCCAATGAG AACAGACTTGTTGAAACATGGTGGCCTGAATTTGTAAACAAGATATTTCCATCTGCAGTAGAAAAGTCACCCAAAGAAGAAGCAAAAAGAATGCGGAGGC TGTTCCCTCCATTCTTGAAACCTGAGGCCTTGCGGAGGTATATAGGTACCATGGATATGGTTACCAAAAGACACTTTGCCTTGGAATGGGGAAACAAAGC AGAGGTGGTCGTCTTCCCTCTGGCAAAAAGCTACACATTCGAGTTGGCTTGCCGCTTGTTTCTAAGTATCGAAGATCCCAGCCACATAGCCAGATTTTCC CACCCATTCAACCATATAACCTCTGGTATTTTTACCATCCCCATTGCTTTTCCTGGAACTCCATTTAATCGAGCCATCAAGGCCACAAAGTTAATCAGAA TTGAGCTTTTGGCCATTATCAGGCAAAGAAAGAAGGATCTTGCAGAAGGAAAGGCATCCCCAACCCAAGACATATTGTCACACATGCTGCTAAGCAATGA TGCGGATGGACAGTACATGAATGAGGTGGAGATTGCTGACAAGATTATTGCATTACTGTTGGGTGCACATGATAGCACTGGTACTGCTTGTACTTTCGTT GTCAAATATCTTGCCGAGATGCCTCATATCTATGAAGCAGTTTACAAGGAGCAAGCTGAGATCATTAAATCCAAAGCACCTGGTGAGTTGTTGAATTGGG TTGACATTCAAAAGATGAAATATTCATGGAATGTAGCTTGTGAAACGTTGAGACTCTCACCACCGTTTATTGGTAACTTCAAAGAAGCCATCAAGGACTT CACATTCAACGGTTTCGCCATCCCAAAGGGCTGGAAGTTGTATTGGAGTGCAAGCTCAACGCATAAAAATCCTGAGTACTTTTCTGAGCCTGAGAAGTTC GATCCCAGTAGATTTGAAGGGAAAGGACCAGCTCCTTACACGTTTATTCCGTTTGGTGGAGGACCCATGATGTGCCCTGGAAATGAATATGCTCGATTAG AAATTCTTGTTTTCATGCATAACTTGGTGAAGAGGTTCAAATTTGAAAGATTGATTCTCGATGAGAAGATAGTATTCGATCCAACGCCAAAACCAGAAAT GGGACTTCCAGTTCGTCTGATTCCTCACAAAGCTTGA
AA sequence Show only first row Show all	>Potri.018G133901.1 pacid=42801369 polypeptide=Potri.018G133901.1.p locus=Potri.018G133901 ID=Potri.018G133901.1.v4.1 annot-version=v4.1 METLYFILLLFVSIILSLIAIIYKHRYQDKLPNLPPGNLGLPFVGESLDFLSKGWKGCPENFIFDRIWKYSSETFKTNLFLQPVVMLNGVAGNKFLFSNE NRLVETWWPEFVNKIFPSAVEKSPKEEAKRMRRLFPPFLKPEALRRYIGTMDMVTKRHFALEWGNKAEVVVFPLAKSYTFELACRLFLSIEDPSHIARFS HPFNHITSGIFTIPIAFPGTPFNRAIKATKLIRIELLAIIRQRKKDLAEGKASPTQDILSHMLLSNDADGQYMNEVEIADKIIALLLGAHDSTGTACTFV VKYLAEMPHIYEAVYKEQAEIIKSKAPGELLNWVDIQKMKYSWNVACETLRLSPPFIGNFKEAIKDFTFNGFAIPKGWKLYWSASSTHKNPEYFSEPEKF DPSRFEGKGPAPYTFIPFGGGPMMCPGNEYARLEILVFMHNLVKRFKFERLILDEKIVFDPTPKPEMGLPVRLIPHKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G133901 [exp]	0	1
AT1G52950			Nucleic acid-binding, OB-fold-...		Potri.003G004401 [exp]	10.95	0.8268
AT5G02930			F-box/RNI-like superfamily pro...		Potri.005G252701 [exp]	20.19	0.8738
AT2G28690			Protein of unknown function (D...		Potri.006G256801 [exp]	54.40	0.8033
AT4G28670			Protein kinase family protein ...		Potri.007G056000 [exp]	62.40	0.8240
AT2G26590		RPN13	regulatory particle non-ATPase...		Potri.003G027722 [exp]	84.62	0.8398
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.003G057250 [exp]	90.28	0.8050
					Potri.014G007300 [exp]	96.56	0.8356
AT3G21690			MATE efflux family protein (.1...		Potri.014G153100 [exp]	97.34	0.8205
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.003G079100 [exp]	110.45	0.8283
AT1G04770			Tetratricopeptide repeat (TPR)...		Potri.009G033201 [exp]	127.24	0.8250

Compare expression of checked genes

Potri.018G133901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.