Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17220 386 / 4e-132 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT1G76360 339 / 1e-112 Protein kinase superfamily protein (.1) AT4G35600 332 / 7e-111 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT5G01020 328 / 2e-109 Protein kinase superfamily protein (.1) AT5G02290 326 / 6e-109 NAK Protein kinase superfamily protein (.1.2) AT1G61590 327 / 1e-108 Protein kinase superfamily protein (.1) AT2G28930 326 / 1e-108 APK1B protein kinase 1B (.1.2.3) AT3G55450 325 / 2e-108 PBL1 PBS1-like 1 (.1.2) AT1G07570 324 / 9e-108 APK1A Protein kinase superfamily protein (.1.2.3) AT5G56460 320 / 3e-106 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G133801 [exp] 508 / 5e-180 AT2G17220 372 / 1e-126 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G135300 [exp] 481 / 2e-169 AT2G17220 358 / 1e-121 kinase 3, Protein kinase superfamily protein (.1.2) Potri.006G072100 [exp] 465 / 1e-162 AT2G17220 343 / 6e-115 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G138401 [exp] 461 / 8e-162 AT2G17220 342 / 2e-115 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G138900 [exp] 428 / 1e-148 AT2G17220 391 / 2e-134 kinase 3, Protein kinase superfamily protein (.1.2) Potri.006G072200 [exp] 410 / 2e-141 AT2G17220 391 / 2e-134 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G139000 [exp] 407 / 5e-140 AT2G17220 362 / 8e-123 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G138700 [exp] 400 / 3e-137 AT2G17220 377 / 4e-128 kinase 3, Protein kinase superfamily protein (.1.2) Potri.004G206100 [exp] 394 / 7e-135 AT2G17220 539 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023000 [exp] 382 / 5e-130 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10001392 [exp] 375 / 2e-127 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10026546 [exp] 385 / 8e-124 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10012256 [exp] 363 / 7e-123 AT1G76360 499 / 1e-175 Protein kinase superfamily protein (.1) Lus10016020 [exp] 362 / 1e-122 AT1G76360 493 / 2e-173 Protein kinase superfamily protein (.1) Lus10013832 [exp] 387 / 9e-121 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008015 [exp] 355 / 1e-119 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10024512 [exp] 352 / 3e-118 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 342 / 5e-115 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 342 / 1e-114 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.018G134100.1 pacid=42801941 polypeptide=Potri.018G134100.1.p locus=Potri.018G134100 ID=Potri.018G134100.1.v4.1 annot-version=v4.1 ATGGGGATTTGCTGGAGTCGGACTTCTGATAAGTCAAATCCAACCCCTGTTGATCCCCCTCCTCCCTCAGATGCTGCCCCCGCCCCTGCCCCTGGCTCAT TCTTTGACCCAGACGCAGCTCCTAGCTCTGTAGGGCATCTTGATGATGATACATCTTTCGGGGGTAGCAATGTCTCTGGAAGCAGCTGGCTCTCTATGGC AACCACCAATTTAACGACATGGATTTATCAAGCAAGCGATGCTATTGCAGCTATTTGGGGCAATGTCCCTGATGACAACGAATTCCTAGTTTCTGTAGAT GATGAGGCCCTTCCGGATGTGGAATCTGGATCAGACTCAAAGTTAAGAGCTTTCACATTTGAGCAATTGAAGGCAGCAACTTTGAATTTTCGTAGCAATA TGGTGCTGGGAGAAGGTGGTTTTGGAAAGGTCTATCAAGGTTGGCTCAAGGAGAAGGTAGCATCTCAGGGAACAAGGAAAAGGCCCATTGCTGTCAAGAG ATTGGATTCCAAAAGCAAGCAAGGATATCGACAGTGGCGGACAGAGGTGGGTTTCTTGGCAAGGCTTTCTCATCCTAATGTTGTAAAGCTGTTGGGATAC TGTCGAGAAGATGAGGAGCATGTTATTGTTTATGAATTCATGAAAAAGGGCAGCTTAAATTACCATTTGTTTGGAAAGGGCCCTGATCGAATGCTTTCGT GGGAGACAAGGCTTAAGGTTTTAATAGGAACGGCTCAAGGCCTTGCTTACTTGCATACAATGGAGAAACCGATAATTTTCAGAGATTTCAAGACCTCAAA TATATTGCTTGATGAGTCTTACACTCCAAAGTTATCGGATTTTGGCTTGGCAAAATGGGGACCTGCAGACGGTGAATCGTATGTATCAGGACATGTTATG GGCACAATTGGCTATGCTGCTCCTGAGTATGTTGCTACAGGGAATTTGTATCTGAAGAGTGATGTGTATAGTTTTGGAGTTGTTTTGTTGGAGATGCTAA CAGGCTTACGAGCATATGATAAAAGCCGTCCGAGTCAGCAAATAAATTTAGTGAACTGGGTTAGACCATTTCTATCAGATAGAAGAAAGGTGAGAAATTT TATGGACCCCAGGTTGGATGGAAAATACCCAGTAAAACAAGTTTTACGAATAGGTCGACTTGCTGTTAGATGTCTTCAGGCGGTACCCCTTTTCCGCCCG TCAATGAAAGAAGTTGCCGAGACCTTGACAAAGATTGGAGCTCGATATAACAGCACTAAGGATGAACCAGAAGCCTTGTCGACGTGA
AA sequence Show only first row Show all	>Potri.018G134100.1 pacid=42801941 polypeptide=Potri.018G134100.1.p locus=Potri.018G134100 ID=Potri.018G134100.1.v4.1 annot-version=v4.1 MGICWSRTSDKSNPTPVDPPPPSDAAPAPAPGSFFDPDAAPSSVGHLDDDTSFGGSNVSGSSWLSMATTNLTTWIYQASDAIAAIWGNVPDDNEFLVSVD DEALPDVESGSDSKLRAFTFEQLKAATLNFRSNMVLGEGGFGKVYQGWLKEKVASQGTRKRPIAVKRLDSKSKQGYRQWRTEVGFLARLSHPNVVKLLGY CREDEEHVIVYEFMKKGSLNYHLFGKGPDRMLSWETRLKVLIGTAQGLAYLHTMEKPIIFRDFKTSNILLDESYTPKLSDFGLAKWGPADGESYVSGHVM GTIGYAAPEYVATGNLYLKSDVYSFGVVLLEMLTGLRAYDKSRPSQQINLVNWVRPFLSDRRKVRNFMDPRLDGKYPVKQVLRIGRLAVRCLQAVPLFRP SMKEVAETLTKIGARYNSTKDEPEALST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134100 [exp]	0	1
AT2G16650		PRORP2	proteinaceous RNase P 2 (.1)		Potri.004G185200 [exp]	10.95	0.8211
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Potri.017G021330 [exp]	11.40	0.8273
AT1G27170			transmembrane receptors;ATP bi...		Potri.019G070522 [exp]	16.58	0.7799
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121801 [exp]	16.91	0.8359
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121900 [exp]	23.87	0.8242
AT5G49690			UDP-Glycosyltransferase superf...		Potri.017G042800 [exp]	23.97	0.8013
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121851 [exp]	25.92	0.8006
AT3G14470			NB-ARC domain-containing disea...		Potri.012G122200 [exp]	28.14	0.8307
AT5G45730			Cysteine/Histidine-rich C1 dom...		Potri.016G044432 [exp]	30.59	0.7689
AT5G62390		ATBAG7	BCL-2-associated athanogene 7 ...		Potri.015G126800 [exp]	31.01	0.7715	CBP.1

Compare expression of checked genes

Potri.018G134100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.