Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17220 303 / 2e-96 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT4G35600 275 / 1e-85 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT2G28930 268 / 4e-83 APK1B protein kinase 1B (.1.2.3) AT5G02290 267 / 4e-83 NAK Protein kinase superfamily protein (.1.2) AT1G61590 268 / 6e-83 Protein kinase superfamily protein (.1) AT5G15080 263 / 2e-80 Protein kinase superfamily protein (.1) AT5G03320 261 / 3e-80 Protein kinase superfamily protein (.1) AT1G76360 261 / 2e-79 Protein kinase superfamily protein (.1) AT1G69790 256 / 8e-79 Protein kinase superfamily protein (.1) AT3G09830 256 / 2e-78 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G134100 [exp] 353 / 1e-115 AT2G17220 386 / 6e-132 kinase 3, Protein kinase superfamily protein (.1.2) Potri.006G072200 [exp] 348 / 2e-114 AT2G17220 391 / 2e-134 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G138900 [exp] 346 / 2e-113 AT2G17220 391 / 2e-134 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G133801 [exp] 340 / 1e-110 AT2G17220 372 / 1e-126 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G135300 [exp] 336 / 2e-109 AT2G17220 358 / 1e-121 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G138401 [exp] 336 / 2e-109 AT2G17220 342 / 2e-115 kinase 3, Protein kinase superfamily protein (.1.2) Potri.006G072100 [exp] 332 / 1e-107 AT2G17220 343 / 6e-115 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G139000 [exp] 323 / 3e-104 AT2G17220 362 / 8e-123 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G138700 [exp] 312 / 1e-99 AT2G17220 377 / 4e-128 kinase 3, Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023000 [exp] 305 / 5e-97 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10001392 [exp] 299 / 8e-95 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10026546 [exp] 300 / 6e-89 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 300 / 1e-87 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010835 [exp] 279 / 2e-87 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 278 / 3e-87 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024512 [exp] 280 / 4e-87 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10012256 [exp] 277 / 2e-86 AT1G76360 499 / 1e-175 Protein kinase superfamily protein (.1) Lus10023794 [exp] 275 / 2e-86 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016020 [exp] 276 / 5e-86 AT1G76360 493 / 2e-173 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.018G134200.8 pacid=42801172 polypeptide=Potri.018G134200.8.p locus=Potri.018G134200 ID=Potri.018G134200.8.v4.1 annot-version=v4.1 ATGGGGATTCACTGGAATTGTCTTGCAGCTGATACTTTAAGTCGAACTTCCGTTGCTGCCCCAGTTCCAGACCTAGACTCGGACTCGGACTCGGACTCGG ACTCCCCTCGTGATTCCATCTTAAAACTGGTTGATGTTGATGCATCTCCTATGGATTCCGCTGAATACAGCTGCTGTTTCACAATGGTAACTGCCTGTAT TTCAACATGGATGTCTAATGCACCTCTTTCGGGTGAGAACAACGTAATACTTGGTGCATTAGACAATTCAAAGTTGAGAGATTTCACATATGAAGAGTTG AGGGCAGCGACCTTCAACTTTAGTATGAATCTGCTGATTGGAAGGGGAGGTTTTGGCAATGTCTACAAGGGTTGGCTCAAGGAGCAGATGCCATCTAAGG GTGCTAGGAACCGAGCAATTGCTGTCAAGAGATTATCTGGACGCAGCAGACAAGGATATCTAGAATTTACGACAGAGATCAGTTTACTGGGAATGGTGTC TCATCCGAATATTTTGAAGGTTTTGGGTTTTTGTCGTGCAAATGAAGAGAAGATCCTTGTCTATGAATACATGCAAAAACGCGGCTTAGACTACCATTTA TTTTCCAAGAAACCAGAACGAGTACTTTCATGGGAAATTAGGCTTAAAATCGCGATAGAAATTGCTGAAGGACTGTCTTACTTGCATACATTAGAGCACC CAATAATTTTCAGAGATATGAAGCCCTCAAATATACTACTTGATAAGTCCTATACTGCGAAGATAGCAGACTTTGGACTGGCAATCACAGCGCCTGCACC CTTGAGAGATCATGATGAATATATACAAGAAGATAGAATTGTTGGCACATATGGTTATATGGATCCTCTTTATGCTCAGACTGGGGAGTTGTGTGTGAAG AGCGATGTTTATGGCTTTGGTGTTGTTTTGGTTCAGCTGCTAACTGGTTCAAGATTAACAAAAAATATCAATGATGATCAAACCGTGGGGGAATGGGCCG AGAAATATCTAAGTAATAGATTCAGGTTGAGAGGCATAATGGACTCCAGGTTGGAGGGGAAGTATGTTACTGGGCAGGCTTCAGAAATAGCAATGCTTGC TCTGAGATGTCTCGTTCGTAACCCCAAATTCCGTCCATCAATGAAAGAAGTTGCCGAGACACTAGAGAAGATCAAAACTCGTGCTTATAACCAGAAACAT CTTGTCATGTGTGGGAAGTGCCATAAAGCTGGACACTACACCAGGTCTTGTGACAAGAACAGTCATGTTGGAGGGAATTCAAAGCTACCAAATGCAAGTG AAGCAATCACAGAGGAGAGGACTTCTTCCACACAATCAACCGTCCAACAAGACAGCGGAAGGAGTGAGGCCAGTGATGTTGTAACAAAGACACTTCAAAC AACTCCCAGCAATTCAAACCTACTAGATGCAAGTAATGGAACGAGCAATGAGAAGACTTCAACAATTCAATCACCTCATCCCCAACAAGGAAGCAAAAGG GATGAGGCAAATCGCGTTGGTACCAGCAAACCTAGGAACAATCATCTTATAAGAAAAACAACTGCCGTCGGAGGTAATTCGAAGGTACTTGAAGCAAGAA ATACAACAAAAAAGGAGAAGACGACTTCTTCTAGATTGAGTGTCCAACAAGGTAATACAAGAAAGGAGGCAAATGGTGTCGCTACCAGCCCATCTTGTAA CAACGGTCCTAAAACCAAAATTCCCAGGAATTCAAAGCTACTAAATGCCACTGATGCTATGAAAAAGGAGAAGATTTCTACGACCAAATCAATTGTCCAA ATAGGTAAAAAGAGAAATGAGGCAAATGGGGTTGGTACTAGCACACCTCGTAGCAAAGGTCATGGAAAAATAACTACAAGCAAGTCAGAGCTACCAAATG CAAGTAACGTAGCAAGGAAAGTGAAAGCTTCTGTCCAACAAGTTAACGAAAGGAACGTGGCAGCTGATGGTGGTATCTGCATAAAATAA
AA sequence Show only first row Show all	>Potri.018G134200.8 pacid=42801172 polypeptide=Potri.018G134200.8.p locus=Potri.018G134200 ID=Potri.018G134200.8.v4.1 annot-version=v4.1 MGIHWNCLAADTLSRTSVAAPVPDLDSDSDSDSDSPRDSILKLVDVDASPMDSAEYSCCFTMVTACISTWMSNAPLSGENNVILGALDNSKLRDFTYEEL RAATFNFSMNLLIGRGGFGNVYKGWLKEQMPSKGARNRAIAVKRLSGRSRQGYLEFTTEISLLGMVSHPNILKVLGFCRANEEKILVYEYMQKRGLDYHL FSKKPERVLSWEIRLKIAIEIAEGLSYLHTLEHPIIFRDMKPSNILLDKSYTAKIADFGLAITAPAPLRDHDEYIQEDRIVGTYGYMDPLYAQTGELCVK SDVYGFGVVLVQLLTGSRLTKNINDDQTVGEWAEKYLSNRFRLRGIMDSRLEGKYVTGQASEIAMLALRCLVRNPKFRPSMKEVAETLEKIKTRAYNQKH LVMCGKCHKAGHYTRSCDKNSHVGGNSKLPNASEAITEERTSSTQSTVQQDSGRSEASDVVTKTLQTTPSNSNLLDASNGTSNEKTSTIQSPHPQQGSKR DEANRVGTSKPRNNHLIRKTTAVGGNSKVLEARNTTKKEKTTSSRLSVQQGNTRKEANGVATSPSCNNGPKTKIPRNSKLLNATDAMKKEKISTTKSIVQ IGKKRNEANGVGTSTPRSKGHGKITTSKSELPNASNVARKVKASVQQVNERNVAADGGICIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134200 [exp]	0	1
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014636 [exp]	1.00	0.9260
AT1G11330			S-locus lectin protein kinase ...		Potri.004G027400 [exp]	3.87	0.8654
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219800 [exp]	4.24	0.9038
AT3G28890		AtRLP43	receptor like protein 43 (.1.2...		Potri.010G009750 [exp]	4.24	0.8934
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.006G061000 [exp]	5.09	0.8723
AT5G62480		GST14B, ATGSTU9	GLUTATHIONE S-TRANSFERASE 14B,...		Potri.008G175050 [exp]	7.07	0.8161
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014200 [exp]	8.12	0.8748
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094700 [exp]	8.94	0.8834
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Potri.004G219700 [exp]	9.16	0.8900
AT5G05340			Peroxidase superfamily protein...		Potri.013G156500 [exp]	10.00	0.8558	Pt-PRX1.15

Compare expression of checked genes

Potri.018G134200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.