Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36110 526 / 0 CYP716A1 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) AT5G36140 328 / 7e-110 CYP716A2 "cytochrome P450, family 716, subfamily A, polypeptide 2", cytochrome P450, family 716, subfamily A, polypeptide 2 (.1) AT3G19270 245 / 7e-76 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT2G29090 243 / 1e-74 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT2G42850 235 / 9e-72 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT5G45340 229 / 9e-70 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 227 / 7e-69 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G36130 194 / 3e-60 Cytochrome P450 superfamily protein (.1) AT5G05690 194 / 2e-56 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT1G12740 191 / 2e-55 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G134700 [exp] 899 / 0 AT5G36110 474 / 7e-165 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.018G149300 [exp] 670 / 0 AT5G36110 585 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.018G134000 [exp] 650 / 0 AT5G36110 559 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.018G133901 [exp] 642 / 0 AT5G36110 526 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.006G085500 [exp] 611 / 0 AT5G36110 573 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.007G002400 [exp] 608 / 0 AT5G36110 585 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.013G106100 [exp] 487 / 9e-170 AT5G36110 470 / 4e-163 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.013G106200 [exp] 484 / 1e-168 AT5G36110 492 / 2e-171 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.019G078600 [exp] 475 / 2e-165 AT5G36110 476 / 2e-165 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040055 [exp] 280 / 8e-89 AT5G36110 318 / 7e-104 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Lus10010940 [exp] 230 / 2e-69 AT2G42850 571 / 0.0 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) Lus10012675 [exp] 226 / 3e-68 AT3G19270 586 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10042652 [exp] 224 / 2e-67 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10035685 [exp] 223 / 4e-67 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10021725 [exp] 221 / 1e-66 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10018898 [exp] 214 / 6e-64 AT5G45340 301 / 3e-97 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10033308 [exp] 213 / 2e-63 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10019858 [exp] 208 / 4e-61 AT3G19270 643 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10028594 [exp] 207 / 4e-61 AT5G45340 299 / 1e-96 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.018G134300.1 pacid=42802120 polypeptide=Potri.018G134300.1.p locus=Potri.018G134300 ID=Potri.018G134300.1.v4.1 annot-version=v4.1 ATGGAAATTTTTTACCTCAACCTCTTCTTTGCTGTCTTCTTCATTTCCATTATCGTTCACAAACATAGATCAAAATTCAAGCACCCTAACCTTCCTCCTG GCAGTTCAGGCCTCCCTTATATTGGGGAGACCCTTGAGCTCTTGTTGACAGGATGCAAAGGCCATCCTCAAAAGTTTTTCCTTGACCGTAAAGCTAAATA CGCATCAGAAGTATTCAAAACAAACCTTTTCTGTCAGCCTGCAGCAGTTTTGTGTGGTGCTGCAGGTAACAAGTTCTTGTTCTCCAATGAGAACAAGGTT CTTAAAGCTTGGTATCCAGACTTTGTGTGCAAAATATTTCCCTCTTCAGTTCAGAGGTCACTCATTGAACAAGTTGATCGACTGCGCACTTTGCTCCCTG AATTTTTGAGACCTGATGCCTTGAAGAGATACGTTGGCATCTTCGATACGGTTGCCGGAAGACACTTTGCATCAGAATGGGAAAATAAAGAAGTTGTGGT TGTGTTCCCTCTAGCAAAGAGCTTTACATTTGGGTTAGCTTGTAGCTTGTTTCTTAGTATTGAAGACCCCGACCACATTGCAAAACTTGCTAGCCCATTT AACCTTGTAGTTTCCGGTATTTTTTCTATCCCAATTGATTTACCTGGAACTCCACTCAACCGTGCCATCAAGGCCGCAAACTTTATTAGAACAGAGCTTT TTGCGATTATTAAGCAAAGAAAAAAAGATCTAGCAGAGGGAAAGGCATCACCCAAGCAAGATATATTGTCACACATGCTGTTGGCATGCGATGAGAAGGG AGCATTTATGAGTGAGCTAAGCATTGCTGACACAATTCTTGCACTATTAGCCAGTGCACATGAGAGCACCAGTGCAGCTTGTGCATTCATTGTCAAGTAT CTTGCTGAGTTACCTCATATTTATGAAGGAGTTTACAAAGAGCAAATGGAGATATCTGAAACCAAAGCTCCTGGCGATGAGTTGTTAAACTGGAATGATA TTCAAAAGATGAGATATTCTTGGAATGTAATTCGTGAAGTGTTGAGACTTTGTCCAACCTTTCCTAATGTTAGAGAAGCCATCCATGGCTTCGATTTCAA TGGTTTCTCAATTCCGAAGGGTTGGAAGGTGTATTGGAATGCAAACTCGACGCATAGAAATCCAGAATACTTCCCAGAACCCGAAAGATTCGATCCTTCC AGATTTGAAGGGACCGGACCAGCTCCTTACACATTTGTTCCATTTGGTGGAGGACCCATGATGTGCCCTGGACAAGGGTTTGCTCGCCTAGAAATGCTTA TTTTCATGCACAATCTGGTGAAAAGGTTCAAGTTTGATAAATTTGTTGCAGAAGAGAAGATAATGTTTAGTCCGATGCCAATACCTGAAAAGGGAGTTCC CATTCGCCTCTTTCCTCACAGACCTTAG
AA sequence Show only first row Show all	>Potri.018G134300.1 pacid=42802120 polypeptide=Potri.018G134300.1.p locus=Potri.018G134300 ID=Potri.018G134300.1.v4.1 annot-version=v4.1 MEIFYLNLFFAVFFISIIVHKHRSKFKHPNLPPGSSGLPYIGETLELLLTGCKGHPQKFFLDRKAKYASEVFKTNLFCQPAAVLCGAAGNKFLFSNENKV LKAWYPDFVCKIFPSSVQRSLIEQVDRLRTLLPEFLRPDALKRYVGIFDTVAGRHFASEWENKEVVVVFPLAKSFTFGLACSLFLSIEDPDHIAKLASPF NLVVSGIFSIPIDLPGTPLNRAIKAANFIRTELFAIIKQRKKDLAEGKASPKQDILSHMLLACDEKGAFMSELSIADTILALLASAHESTSAACAFIVKY LAELPHIYEGVYKEQMEISETKAPGDELLNWNDIQKMRYSWNVIREVLRLCPTFPNVREAIHGFDFNGFSIPKGWKVYWNANSTHRNPEYFPEPERFDPS RFEGTGPAPYTFVPFGGGPMMCPGQGFARLEMLIFMHNLVKRFKFDKFVAEEKIMFSPMPIPEKGVPIRLFPHRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G134300 [exp]	0	1
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Potri.013G157200 [exp]	6.92	0.9665
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.011G037300 [exp]	11.18	0.9612
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.011G037600 [exp]	11.22	0.9632
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G172801 [exp]	16.61	0.9513
AT1G58120			unknown protein		Potri.002G104500 [exp]	16.73	0.9487
AT2G26530		AR781	Protein of unknown function (D...		Potri.002G128500 [exp]	22.13	0.9596
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Potri.002G224100 [exp]	23.66	0.9592	ACO2,ACO1.1
AT5G28237			Pyridoxal-5'-phosphate-depende...		Potri.011G024900 [exp]	25.45	0.9419
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Potri.005G022000 [exp]	27.74	0.9578
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Potri.011G044600 [exp]	28.72	0.7610

Compare expression of checked genes

Potri.018G134300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.