Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17220 184 / 1e-55 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT1G76360 171 / 7e-50 Protein kinase superfamily protein (.1) AT5G01020 159 / 5e-46 Protein kinase superfamily protein (.1) AT4G35600 158 / 2e-45 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT2G39660 157 / 2e-45 BIK1 botrytis-induced kinase1 (.1) AT5G02290 157 / 2e-45 NAK Protein kinase superfamily protein (.1.2) AT3G55450 157 / 3e-45 PBL1 PBS1-like 1 (.1.2) AT2G28930 157 / 5e-45 APK1B protein kinase 1B (.1.2.3) AT3G28690 155 / 6e-45 Protein kinase superfamily protein (.1.2.3) AT2G02800 155 / 2e-44 Kin2, APK2B protein kinase 2B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G135300 [exp] 445 / 7e-158 AT2G17220 358 / 1e-121 kinase 3, Protein kinase superfamily protein (.1.2) Potri.006G072100 [exp] 341 / 1e-116 AT2G17220 343 / 6e-115 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G138401 [exp] 328 / 7e-112 AT2G17220 342 / 2e-115 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G134100 [exp] 280 / 1e-92 AT2G17220 386 / 6e-132 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G133801 [exp] 271 / 2e-89 AT2G17220 372 / 1e-126 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G138900 [exp] 239 / 6e-77 AT2G17220 391 / 2e-134 kinase 3, Protein kinase superfamily protein (.1.2) Potri.006G072200 [exp] 222 / 3e-70 AT2G17220 391 / 2e-134 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G139000 [exp] 221 / 2e-69 AT2G17220 362 / 8e-123 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G138700 [exp] 200 / 2e-61 AT2G17220 377 / 4e-128 kinase 3, Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026546 [exp] 196 / 6e-57 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 196 / 2e-56 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001392 [exp] 185 / 1e-55 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10012256 [exp] 184 / 2e-55 AT1G76360 499 / 1e-175 Protein kinase superfamily protein (.1) Lus10023000 [exp] 182 / 9e-55 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10016020 [exp] 180 / 5e-54 AT1G76360 493 / 2e-173 Protein kinase superfamily protein (.1) Lus10024512 [exp] 173 / 6e-51 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10008015 [exp] 171 / 4e-50 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10027589 [exp] 165 / 2e-48 AT2G07180 545 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037165 [exp] 168 / 8e-48 AT5G01020 428 / 9e-146 Protein kinase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G135001.1 pacid=42801783 polypeptide=Potri.018G135001.1.p locus=Potri.018G135001 ID=Potri.018G135001.1.v4.1 annot-version=v4.1 ATGGGAATTTGTTGGAGTGCCAAGCCAAATCCATCCCCTGCACCAGCACCAGCTTCTGCATCAGCACCAGCCCCGGATCCATTAATTGACCCAGACGCAG CTCCTACCCCTCCTGGACATCTCATTGAAGGTGATATATCTTTTCTTGTTAGCAATGTCTCTGGCAACAGCTGGTTCTCTATAGCCACCACCAATTTTAC AACATGGATTTCTCAAGCAAAGGATGCTATTCGGGGTAAAAATGTCCCCGAGGACATCGAAATCCCAGCCCTTCCGTCAAAGTTGAAAGTTTTCACGTTG GAACAATTGAAGGAAGCAACCTTCGATTTTAGAAATGACATGGTCCTGGGAAAGGGAGGGTTTGGCAGTGTCTACAAGGGTTCACTAAAAGAAAAGGTGC CTTTTAAGAAAAGTAGGAAATTGCGCATTGCTGTCAAGAAATTGGGTTCAAATAGCAAGCAAGGACTTAGACAGTGGCAGACAGAGGTTGGTTTCTTGGC AAAGCTTTCTCATCCCAACATTGTGAAGTTGCTTGGATACTGTCAGGAAGAAGAAAATAGAGAGTTGCTTATTGTCTATGAATTCATGGAGAAGGGTAGT TTAAATTACCATTTGTTTGGAAAACGATCTGATCAGCAACTTCCTTGGGAAACAAGACTGATGATTGCAACAGAAATGGCTCAAGCCCTGTCTTATTTGC ATTCTATGGATAGGCCAATAATTTTCAGAGATTTCAAGACCTCAAATATATTACTTGATGAGGTCATCTGTCTTATTTGCATTCTATGGATAGACCTCCG GAGCCATTTTTATCTGGTTGTATCCTGA
AA sequence Show only first row Show all	>Potri.018G135001.1 pacid=42801783 polypeptide=Potri.018G135001.1.p locus=Potri.018G135001 ID=Potri.018G135001.1.v4.1 annot-version=v4.1 MGICWSAKPNPSPAPAPASASAPAPDPLIDPDAAPTPPGHLIEGDISFLVSNVSGNSWFSIATTNFTTWISQAKDAIRGKNVPEDIEIPALPSKLKVFTL EQLKEATFDFRNDMVLGKGGFGSVYKGSLKEKVPFKKSRKLRIAVKKLGSNSKQGLRQWQTEVGFLAKLSHPNIVKLLGYCQEEENRELLIVYEFMEKGS LNYHLFGKRSDQQLPWETRLMIATEMAQALSYLHSMDRPIIFRDFKTSNILLDEVICLICILWIDLRSHFYLVVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G135001 [exp]	0	1
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G135300 [exp]	1.41	0.9812
AT4G27360			Dynein light chain type 1 fami...		Potri.011G126400 [exp]	2.23	0.9573
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016900 [exp]	2.44	0.9604
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Potri.008G152300 [exp]	4.12	0.9401
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Potri.001G258100 [exp]	5.91	0.9518
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007700 [exp]	6.63	0.9589
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Potri.003G009300 [exp]	8.36	0.9455
AT2G05620		PGR5	proton gradient regulation 5 (...		Potri.008G171000 [exp]	10.58	0.9474	PGR5.2
AT1G34000		OHP2	one-helix protein 2 (.1)		Potri.002G065000 [exp]	11.74	0.9562	Lil6_1,OHP2.2
AT3G17609	bZIP	HYH	HY5-homolog (.1.2.3.4)		Potri.010G004200 [exp]	13.41	0.9425	HY5.1

Compare expression of checked genes

Potri.018G135001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.