Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17220 358 / 2e-121 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT1G76360 325 / 2e-107 Protein kinase superfamily protein (.1) AT5G02290 315 / 7e-105 NAK Protein kinase superfamily protein (.1.2) AT5G01020 312 / 1e-103 Protein kinase superfamily protein (.1) AT2G28930 310 / 1e-102 APK1B protein kinase 1B (.1.2.3) AT4G35600 306 / 4e-101 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT1G61590 305 / 2e-100 Protein kinase superfamily protein (.1) AT1G07570 302 / 9e-100 APK1A Protein kinase superfamily protein (.1.2.3) AT5G15080 305 / 2e-99 Protein kinase superfamily protein (.1) AT2G05940 302 / 6e-99 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G072100 [exp] 577 / 0 AT2G17220 343 / 6e-115 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G138401 [exp] 576 / 0 AT2G17220 342 / 2e-115 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G134100 [exp] 481 / 1e-169 AT2G17220 386 / 6e-132 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G135001 [exp] 444 / 2e-157 AT2G17220 184 / 1e-55 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G133801 [exp] 448 / 1e-156 AT2G17220 372 / 1e-126 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G138900 [exp] 398 / 3e-137 AT2G17220 391 / 2e-134 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G139000 [exp] 375 / 6e-128 AT2G17220 362 / 8e-123 kinase 3, Protein kinase superfamily protein (.1.2) Potri.006G072200 [exp] 372 / 6e-127 AT2G17220 391 / 2e-134 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G138700 [exp] 362 / 1e-122 AT2G17220 377 / 4e-128 kinase 3, Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023000 [exp] 358 / 3e-121 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10001392 [exp] 353 / 2e-119 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10026546 [exp] 369 / 2e-118 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10016020 [exp] 343 / 1e-115 AT1G76360 493 / 2e-173 Protein kinase superfamily protein (.1) Lus10012256 [exp] 343 / 1e-115 AT1G76360 499 / 1e-175 Protein kinase superfamily protein (.1) Lus10013832 [exp] 368 / 1e-114 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024512 [exp] 327 / 8e-109 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10008015 [exp] 325 / 3e-108 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10036762 [exp] 317 / 1e-104 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10030743 [exp] 314 / 5e-104 AT1G76360 483 / 2e-169 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.018G135300.2 pacid=42801310 polypeptide=Potri.018G135300.2.p locus=Potri.018G135300 ID=Potri.018G135300.2.v4.1 annot-version=v4.1 ATGGGAATTTGTTGGAGTGCCAAGCCAAATCCATCCCCTGCACCAGCACCAGCTTCTGCATCAGCACCAGCCCCGGATCCATTAATTGACCCAGACGCAG CTCCTACCCCTCCTGGACATCTCATTGAAGGTGATATATCTTTTCTTGTTAGCAATGTCTCTGGCAACAGCTGGTTCTCTATAGCCACCACCAATTTTAC AACATGGATTTCTCAAGCAAAGGATGCTATTCGGGGTAAAAATGTCCCCGAGGACATCGAAATCCCAGCCCTTCCGTCAAAGTTGAAAGTTTTCACGTTG GAACAATTGAAGGAAGCAACCTTCGATTTTAGAAATGACATGGTCCTGGGAAAGGGAGGGTTTGGCAGTGTCTACAAGGGTTCACTAAAAGAAAAGGTGC CTTTTAAGAAAAGTAGGAAATTGCGCATTGCTGTCAAGAAATTGGGTTCAAATAGCAAGCAAGGACTTAGACAGTGGCAGACAGAGGTTGGTTTCTTGGC AAAGCTTTCTCATCCCAACATTGTGAAGTTGCTTGGATACTGTCAGGAAGAAGAAAATAGAGAGTTGCTTATTGTCTATGAATTCATGGAGAAGGGTAGT TTAAATTACCATTTGTTTGGAAAACGATCTGATCAGCAACTTCCTTGGGAAACAAGACTGATGATTGCAACAGAAATGGCTCAAGCCCTGTCTTATTTGC ATTCTATGGATAGGCCAATAATTTTCAGAGATTTCAAGACCTCAAATATATTACTTGATGAGTCTTATACTCCGAAGCTGTCAGATTTTGGCTTGGCAAA ATGGGGACCCAATGATGGCACTTCATATGTAACAGGAAATGTTATGGGTACACATGGTTATGTTGGTCCGGAATATAAGACTGGAGGGAAACTGTATGTA AAGAGCGATGTCTATAGTTTCGGAGTAGTTTTGATCGAGTTGCTAACAGGCTTACGGGCGATCGATAAAAAACGTCCGCCTAAGCAACAAGACCTGCAAG AATGGGCATTACCATTTCTAACCGACAGAAAAAAGCTGAGACAAATCATGGACCCCAGATTGCAGGGGAAGTATGGTAGCAAACAAGCTTTGAAAATAGC TATGCTTGCCGTAAGATGTCTTTACTCGCATCCCATGATCCGGCCATCAATGAAAGAAGTTGCCGAGACACTAGAACGAGTAAAGCTTCGGACTTGA
AA sequence Show only first row Show all	>Potri.018G135300.2 pacid=42801310 polypeptide=Potri.018G135300.2.p locus=Potri.018G135300 ID=Potri.018G135300.2.v4.1 annot-version=v4.1 MGICWSAKPNPSPAPAPASASAPAPDPLIDPDAAPTPPGHLIEGDISFLVSNVSGNSWFSIATTNFTTWISQAKDAIRGKNVPEDIEIPALPSKLKVFTL EQLKEATFDFRNDMVLGKGGFGSVYKGSLKEKVPFKKSRKLRIAVKKLGSNSKQGLRQWQTEVGFLAKLSHPNIVKLLGYCQEEENRELLIVYEFMEKGS LNYHLFGKRSDQQLPWETRLMIATEMAQALSYLHSMDRPIIFRDFKTSNILLDESYTPKLSDFGLAKWGPNDGTSYVTGNVMGTHGYVGPEYKTGGKLYV KSDVYSFGVVLIELLTGLRAIDKKRPPKQQDLQEWALPFLTDRKKLRQIMDPRLQGKYGSKQALKIAMLAVRCLYSHPMIRPSMKEVAETLERVKLRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G135300 [exp]	0	1
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G135001 [exp]	1.41	0.9812
AT1G33270			Acyl transferase/acyl hydrolas...		Potri.001G209500 [exp]	3.00	0.9605
AT5G62165	MADS	FYF, AGL42	FOREVER YOUNG FLOWER, AGAMOUS-...		Potri.012G133000 [exp]	3.46	0.9578
AT5G43260			chaperone protein dnaJ-related...		Potri.003G171800 [exp]	3.87	0.9577
AT1G08280			Glycosyltransferase family 29 ...		Potri.009G144000 [exp]	7.07	0.9497
AT3G17609	bZIP	HYH	HY5-homolog (.1.2.3.4)		Potri.010G004200 [exp]	7.34	0.9510	HY5.1
AT3G53810			Concanavalin A-like lectin pro...		Potri.006G088801 [exp]	8.66	0.9450
AT3G19660			unknown protein		Potri.017G109900 [exp]	10.00	0.9388
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016900 [exp]	10.67	0.9427
AT1G42550		PMI1	plastid movement impaired1 (.1...		Potri.005G255500 [exp]	10.95	0.9567

Compare expression of checked genes

Potri.018G135300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.