Plant FIBer expression Database

Potri.018G136800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G15093 333 / 1e-115 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T045400
[exp]
590 / 0 AT4G15093 338 / 1e-117 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1)
Potri.004G135200
[exp]
496 / 3e-180 AT4G15093 343 / 8e-120 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1)
Potri.004G135300
[exp]
439 / 2e-157 AT4G15093 358 / 1e-125 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1)
Potri.T034182
[exp]
110 / 7e-31 AT4G15093 102 / 3e-28 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1)
Potri.018G145550
[exp]
93 / 6e-24 AT4G15093 82 / 3e-20 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1)
Potri.018G136303
[exp]
52 / 1e-08 AT4G15093 44 / 2e-06 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034361
[exp]
419 / 1e-149 AT4G15093 364 / 6e-128 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0283 LigB PF02900 LigB Catalytic LigB subunit of aromatic ring-opening dioxygenase
Representative CDS sequence
>Potri.018G136800.1 pacid=42802102 polypeptide=Potri.018G136800.1.p locus=Potri.018G136800 ID=Potri.018G136800.1.v4.1 annot-version=v4.1
ATGCGTTTGCTCCATTCATTGAATCAAAAGTACAGATTTTTTTCAATTTGCAAAAGGGGTTTGATGGATACGGTTTATATCTCCCATGGGTCACCAATGA
TGGCGATCGATGAAAGCATACCAGCGAGGAAATTCTTGAAGACATGGCAACAAATTTTCAAAGAAAGACCTAACGCCATTCTTGTTATTTCTGGCCATTG
GGATACCAAAGAACCAACTGTTAATGTTGTTAATCGCAATGACACTATTTATGACTTCTATGGCTTCCCCAAATCCATGTATAAGCTCAAATATACACCG
CCAGGTGCTCCACTATTGGCAAAGAGGGTGAAGGAACTGCTCATGGCAAATGGTTTCAAGCGTGTTCATGAAGATAAAACACGAGGAGTTGACCATGGCA
CATGGGTTCCTCTGATGTTCATGTATCCTGAGGCTGACATTCCAGTGTGCCAGCTCTCTGTTCAGACTGATAGAGATGGAACTTACCATTATAACTTGGG
GAAGGCATTGGCCCCCCTTAGGGAGGAAGGTATCCTCATCATGGGATCTGGAGCTACTACTCACAACTTGGGGACCATGCAACCCAGTGGCAGTCCTGTT
CCTTCATGGGCTTTGCAGTTTGATACCTGGCTAAAAAATGCCCTTCTTGAAGGAAGATATGAAGACGTGAATCACTACGACTCCAGGGCACCATATGGAA
AAATGGCTCATCCTTGGCCAGACCACTTTTACCCTTTGCATGTGGCTATAGGGGCAGCGGGTGAAAATGCCAAGGCGAAGCTAGTGCACCATAGCTGGGA
CAATGGCACCCTTTCTTATGCTTCCTACCAGTTCACAGCACGTAAATAA
AA sequence
>Potri.018G136800.1 pacid=42802102 polypeptide=Potri.018G136800.1.p locus=Potri.018G136800 ID=Potri.018G136800.1.v4.1 annot-version=v4.1
MRLLHSLNQKYRFFSICKRGLMDTVYISHGSPMMAIDESIPARKFLKTWQQIFKERPNAILVISGHWDTKEPTVNVVNRNDTIYDFYGFPKSMYKLKYTP
PGAPLLAKRVKELLMANGFKRVHEDKTRGVDHGTWVPLMFMYPEADIPVCQLSVQTDRDGTYHYNLGKALAPLREEGILIMGSGATTHNLGTMQPSGSPV
PSWALQFDTWLKNALLEGRYEDVNHYDSRAPYGKMAHPWPDHFYPLHVAIGAAGENAKAKLVHHSWDNGTLSYASYQFTARK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G15093 catalytic LigB subunit of arom... Potri.018G136800
[exp]
0 1
AT3G16510 Calcium-dependent lipid-bindin... Potri.010G024200
[exp]
4.35 0.7939 SRC2.1
AT1G76680 OPR1, ATOPR1 ARABIDOPSIS 12-OXOPHYTODIENOAT... Potri.003G004200
[exp]
5.65 0.8376
AT1G61250 SC3 secretory carrier 3 (.1.2) Potri.011G045100
[exp]
9.16 0.8045 PSAM2.2
AT3G19480 D-3-phosphoglycerate dehydroge... Potri.014G022800
[exp]
9.79 0.8005
AT4G10110 RNA-binding (RRM/RBD/RNP motif... Potri.019G069000
[exp]
15.49 0.8064
AT5G47650 ATNUDX2, ATNUDT... ARABIDOPSIS THALIANA NUDIX HYD... Potri.016G006000
[exp]
16.61 0.8349
AT3G51000 alpha/beta-Hydrolases superfam... Potri.007G018900
[exp]
18.49 0.8296
AT5G63970 Copine (Calcium-dependent phos... Potri.005G065700
[exp]
20.78 0.8189
AT2G47710 Adenine nucleotide alpha hydro... Potri.002G205275
[exp]
20.83 0.8148
AT2G17440 PIRL5 plant intracellular ras group-... Potri.003G090100
[exp]
22.24 0.8065

Potri.018G136800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.