Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33420 451 / 1e-160 Peroxidase superfamily protein (.1) AT5G42180 288 / 2e-96 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT5G51890 278 / 1e-92 Peroxidase superfamily protein (.1) AT3G03670 256 / 8e-84 Peroxidase superfamily protein (.1) AT4G11290 254 / 2e-83 Peroxidase superfamily protein (.1) AT1G05260 254 / 4e-83 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT5G17820 250 / 1e-81 Peroxidase superfamily protein (.1) AT4G36430 249 / 2e-81 Peroxidase superfamily protein (.1) AT5G39580 246 / 4e-80 Peroxidase superfamily protein (.1.2) AT5G64120 245 / 2e-79 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T045500 [exp] 645 / 0 AT4G33420 441 / 9e-157 Peroxidase superfamily protein (.1) Potri.004G134800 [exp] 571 / 0 AT4G33420 457 / 3e-163 Peroxidase superfamily protein (.1) Potri.005G108900 [exp] 294 / 5e-99 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1) Potri.002G018000 [exp] 270 / 1e-89 AT5G42180 483 / 1e-173 peroxidase 64, Peroxidase superfamily protein (.1) Potri.005G195600 [exp] 265 / 3e-87 AT1G71695 460 / 4e-163 Peroxidase superfamily protein (.1) Potri.002G065300 [exp] 265 / 3e-87 AT1G71695 468 / 2e-166 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 261 / 3e-86 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 255 / 2e-83 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.005G195700 [exp] 254 / 7e-83 AT1G71695 453 / 2e-160 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029543 [exp] 463 / 3e-165 AT4G33420 479 / 1e-171 Peroxidase superfamily protein (.1) Lus10034547 [exp] 288 / 2e-96 AT5G42180 471 / 7e-169 peroxidase 64, Peroxidase superfamily protein (.1) Lus10017288 [exp] 287 / 3e-96 AT5G42180 462 / 4e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10005614 [exp] 286 / 1e-95 AT5G42180 461 / 6e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10027405 [exp] 277 / 3e-92 AT5G51890 448 / 2e-159 Peroxidase superfamily protein (.1) Lus10031664 [exp] 276 / 9e-92 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1) Lus10010634 [exp] 265 / 6e-87 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10018374 [exp] 256 / 5e-84 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10027164 [exp] 253 / 1e-82 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039680 [exp] 252 / 2e-82 AT1G05260 458 / 3e-163 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.018G136900.2 pacid=42801300 polypeptide=Potri.018G136900.2.p locus=Potri.018G136900 ID=Potri.018G136900.2.v4.1 annot-version=v4.1 ATGGCTACGGCTAATTTTCTTGCTTTGTTTTTATTGATGGAGTTAATAGCAGGTGGTTATAGAGATGGAGCGAATGGCCTCAGCATGAACTATTACGTTT TCAGCTGCCCATTTGCTGAGGCAATTGTGAGGAACACAGTAACAAGTGCTTTGAAGTCTGATCCTACCTTAGCAGCTGGTCTTGTTAGAATGCATTTCCA TGATTGCTGGATACAAGGATGTGATGGGTCTGTGCTGATAGACTCAACAAAGGATAACACAGCAGAGAAGGAATCTCCAGGAAATCAAAGCGTGAGAGGC TTTGAACTCATTGATGATGTAAAGGAGCAACTTGAAGAGCAATGCCCTGGTGTTGTCTCATGCGCTGACATTGTTGCAATGGCTGCTAGAGAGGCTGTTG CTTTGTCAGGAGGTCCAGTTTATGACATACCAAAAGGAAGAAAAGATGGAAGGAGGTCTAAAATTGAAGATACTCTCAGTGCGCCTGCTCCAACTTTTAA TGCCTCGGAGCTCGTTAGAGTCTTTGGCCTCCGTGGTTTTAGTGCCCAAGACATGGTTGCCTTGTCTGGGGGGCACACACTAGGGGTGGCAAGGTGTTTA ACGTTCAAAAATAGGTTGAGTGACCCTGTTGATCCGACTATGGATTCAGACTTTTCAAAGACTTTGTCCAAAACATGTAGTGGTGGAGACGATGCAGAAC AAACATTTGATATGACAAGAAATAATTTTGATAACTTCTACTTCCAAGCATTGCAGAGGAAATCAGGAGTTCTTTTTTCAGACCAAACCCTATACAATAA TCCAAGAACAAAATCAATTGTCAAAGACTACGCTATGAACCAGGCTAAGTTTTTCCTTGATTTTCAACAGGCAATGGTGAAAATGAGCTTGCTCGATGTC AAGGAGGGATCACAAGGAGAAGTAAGAGCAGATTGTCGTAAAATTAACTGA
AA sequence Show only first row Show all	>Potri.018G136900.2 pacid=42801300 polypeptide=Potri.018G136900.2.p locus=Potri.018G136900 ID=Potri.018G136900.2.v4.1 annot-version=v4.1 MATANFLALFLLMELIAGGYRDGANGLSMNYYVFSCPFAEAIVRNTVTSALKSDPTLAAGLVRMHFHDCWIQGCDGSVLIDSTKDNTAEKESPGNQSVRG FELIDDVKEQLEEQCPGVVSCADIVAMAAREAVALSGGPVYDIPKGRKDGRRSKIEDTLSAPAPTFNASELVRVFGLRGFSAQDMVALSGGHTLGVARCL TFKNRLSDPVDPTMDSDFSKTLSKTCSGGDDAEQTFDMTRNNFDNFYFQALQRKSGVLFSDQTLYNNPRTKSIVKDYAMNQAKFFLDFQQAMVKMSLLDV KEGSQGEVRADCRKIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33420			Peroxidase superfamily protein...		Potri.018G136900 [exp]	0	1
AT2G33550	Trihelix		Homeodomain-like superfamily p...		Potri.001G066900 [exp]	3.46	0.8501
AT5G12300			Calcium-dependent lipid-bindin...		Potri.009G070400 [exp]	4.58	0.8458
AT2G42430	AS2	ASL18, LBD16	ASYMMETRIC LEAVES2-LIKE 18, la...		Potri.005G221900 [exp]	6.24	0.8249	LBD16.3
AT5G23750			Remorin family protein (.1.2)		Potri.015G143600 [exp]	7.21	0.8535
AT1G77460			Armadillo/beta-catenin-like re...		Potri.002G081101 [exp]	7.87	0.8591
					Potri.008G084200 [exp]	8.94	0.8156
AT4G35160			O-methyltransferase family pro...		Potri.019G102900 [exp]	9.79	0.8565	COMTL3,Pt-GSI.2
AT5G20260			Exostosin family protein (.1)		Potri.006G064900 [exp]	10.48	0.8128
AT1G52080		AR791	actin binding protein family (...		Potri.001G191300 [exp]	12.44	0.7970
AT4G33565			RING/U-box superfamily protein...		Potri.007G111900 [exp]	16.49	0.8187

Compare expression of checked genes

Potri.018G136900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.