Plant FIBer expression Database

Potri.018G137500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G08500 917 / 0 Transmembrane CLPTM1 family protein (.1)
AT5G23575 895 / 0 Transmembrane CLPTM1 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T045800
[exp]
1151 / 0 AT5G08500 919 / 0.0 Transmembrane CLPTM1 family protein (.1)
Potri.004G134500
[exp]
1095 / 0 AT5G08500 873 / 0.0 Transmembrane CLPTM1 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019695
[exp]
956 / 0 AT5G08500 944 / 0.0 Transmembrane CLPTM1 family protein (.1)
Lus10016422
[exp]
947 / 0 AT5G08500 905 / 0.0 Transmembrane CLPTM1 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05602 CLPTM1 Cleft lip and palate transmembrane protein 1 (CLPTM1)
Representative CDS sequence
>Potri.018G137500.1 pacid=42801715 polypeptide=Potri.018G137500.1.p locus=Potri.018G137500 ID=Potri.018G137500.1.v4.1 annot-version=v4.1
ATGCCGCCACCTACAGGACCAGGAGGAGGAGGAGGAGGAACTGGTGGTGGTGAAGTAGGGCAACAGAGACAAGGACAGCAACAACAACAAGGAGGGATGG
GGCAAACAATAACAGGGATAATAAGGATGGCTGTTTTTTGGTATTTCATCTCTAAATTCATCTCTCCCAAAAAAGCCCCCACTGACCCTTCCATCCTAAT
CTCCAATCTCTTCCAAAAAGGAGAGTCTTTGGATATGTGGTTCTATCTCTCCGAGCATGAAAGGTTTAATGACTTCTCTAATGAAGGCGCGCTTATTTGG
CATGAAACTAATATACCTTATGCTGTTTGGGGACCAGAGAGTACAAGGTCTCTTTCTTTGAAATACCATCCATCTGAGGCATTGAAGCACAATGGCACTC
TTTATGGCCACATTTTCTTTGCACAATCTGGATATCCACCAGATCCCAGTGATCCTGAGTACCAGCCTCTTGCTGCCTTTGGAAGAACACATCCTGTTGT
CACATACTTGCCCAAGTCAAAATCAGATAAAAGGAAGAGCCTGTGGGGGAATTCCAAAGACTCCGAGGAGGTTGAAGCAGCATCTCAGGTGGTTGATGAT
AGTCAAGCCGATTCTAAAGATGATGGCCCTGTAGAATGGATTTCATATTGGAAACCTAATGTTACCATTAATCTAGTTGATGATTTCACAAAATACCCCC
ATAATGCTGTACCTCCAAATATTGCTCCTTACTTGAATGTTGAGCCTACTTCAGGGAATTACTTCCCCACCCTATTCTTCAACGAGTTCTGGCTGCTTCG
AGATAAATTTATCGCAATTAATGATACTGTGACAGAATTGACACTTAATTTGGAGGTGGGTCCTATAAGCACGACAAAATGGCAGCTATTCCTGCAGATT
GATCAGTCATTCCAGGTTCATCGTAGTTATGGAAGCATGCTTGAAGGCGAGGCTGATGAACTGAAGAGGGTGTTCTTGGAAGGAAATCCTTACCTCCTGG
TGATCACAATGGTCGTTTCAATGCTTCATTCAGTGTTTGACTTCCTGGCATTCAAGAATGATATCCAATTTTGGAACAAAAATAAGTCTATGGAAGGACT
GTCTGCAAAGTCTGTTGTTGTGAGCTTTATATCTCAGCTCATTGTCTTTCTCTATCTGCTTGACAATGACACTTCATGGATGATACTTGGAAGTTCTGGG
ATTGGTTGCTGCATTGAGTTTTGGAAAATAGGGAAAGCTATGCACATAGAGATTGATAGAAGTGGAAAAATCCCTATGTTAAGGTTCCGAGATCGCGAAT
CATATGCAGGGAATAAGACAAAGGAATATGATGACATTGCAATGAAGTATTTGTCCTATGTGCTCTTCTTCCTTGTTGCATGCTCTTCTGTTTACTCACT
AATGTATGAGCGCCACAAGAGCTGGTATTCCTGGATTCTTTCTTCACTCACCAGCTGTGTGTACATGTTTGGTTTTATCATGATGTGCCCTCAGTTGTTT
ATAAATTATAAGCTGAAGTCTGTGGCACATCTCCCATGGAGGCAGATGACATACAAGTTCCTTAACACCATTATTGATGATCTTTTTGCATTTGTCATCA
AAATGCCAACATTGCATCGGCTATCTGTCTTCCGAGATGATCTTATATTTCTGATATACCTATATCAGAGGTGGGCTTATCCAGTGGACAAAACTCGTGT
AAATGAATTTGGTTTTGGTGGTGAGGATGATCAGGCATCGTCTGGTGAAGTAACTCCTGCAAAAGAGGAAGAGAAGAAGACCAACTGA
AA sequence
>Potri.018G137500.1 pacid=42801715 polypeptide=Potri.018G137500.1.p locus=Potri.018G137500 ID=Potri.018G137500.1.v4.1 annot-version=v4.1
MPPPTGPGGGGGGTGGGEVGQQRQGQQQQQGGMGQTITGIIRMAVFWYFISKFISPKKAPTDPSILISNLFQKGESLDMWFYLSEHERFNDFSNEGALIW
HETNIPYAVWGPESTRSLSLKYHPSEALKHNGTLYGHIFFAQSGYPPDPSDPEYQPLAAFGRTHPVVTYLPKSKSDKRKSLWGNSKDSEEVEAASQVVDD
SQADSKDDGPVEWISYWKPNVTINLVDDFTKYPHNAVPPNIAPYLNVEPTSGNYFPTLFFNEFWLLRDKFIAINDTVTELTLNLEVGPISTTKWQLFLQI
DQSFQVHRSYGSMLEGEADELKRVFLEGNPYLLVITMVVSMLHSVFDFLAFKNDIQFWNKNKSMEGLSAKSVVVSFISQLIVFLYLLDNDTSWMILGSSG
IGCCIEFWKIGKAMHIEIDRSGKIPMLRFRDRESYAGNKTKEYDDIAMKYLSYVLFFLVACSSVYSLMYERHKSWYSWILSSLTSCVYMFGFIMMCPQLF
INYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPTLHRLSVFRDDLIFLIYLYQRWAYPVDKTRVNEFGFGGEDDQASSGEVTPAKEEEKKTN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G08500 Transmembrane CLPTM1 family pr... Potri.018G137500
[exp]
0 1
AT5G26360 TCP-1/cpn60 chaperonin family ... Potri.018G138200
[exp]
3.16 0.9172
AT4G30920 AtLAP2, LAP2 leucyl aminopeptidase 2, Cytos... Potri.006G184500
[exp]
10.58 0.9045
AT1G05090 dentin sialophosphoprotein-rel... Potri.002G227200
[exp]
12.96 0.8976
AT3G10980 SAG20, WI12, AT... PLAC8 family protein (.1) Potri.008G075300
[exp]
13.49 0.8874
AT2G44610 RAB6, AtRABH1b,... Ras-related small GTP-binding ... Potri.001G147900
[exp]
14.14 0.9060
AT1G55915 zinc ion binding (.1) Potri.011G092900
[exp]
14.69 0.8224
AT3G06850 DIN3, LTA1, BCE... DARK INDUCIBLE 3, 2-oxoacid de... Potri.008G219700
[exp]
15.58 0.9057
AT5G19550 AAT2, ASP2 aspartate aminotransferase 2 (... Potri.018G082500
[exp]
15.65 0.8666 Pt-ASP4.1
AT5G14430 S-adenosyl-L-methionine-depend... Potri.001G342300
[exp]
16.24 0.8792
AT5G26830 Threonyl-tRNA synthetase (.1) Potri.010G096500
[exp]
17.02 0.8922 Pt-THRRS.2

Potri.018G137500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.