Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1) AT4G27190 308 / 5e-89 NB-ARC domain-containing disease resistance protein (.1) AT1G12210 285 / 2e-81 RFL1 RPS5-like 1 (.1) AT1G12220 275 / 5e-78 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT4G10780 270 / 3e-76 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12280 270 / 5e-76 LRR and NB-ARC domains-containing disease resistance protein (.1) AT4G26090 269 / 7e-76 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G12290 263 / 3e-74 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61180 254 / 1e-70 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT5G05400 252 / 3e-70 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G002800 [exp] 1371 / 0 AT4G27220 317 / 9e-93 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014380 [exp] 1246 / 0 AT4G27220 302 / 5e-87 NB-ARC domain-containing disease resistance protein (.1) Potri.019G013140 [exp] 1235 / 0 AT4G27220 294 / 1e-84 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014308 [exp] 1231 / 0 AT4G27220 326 / 1e-95 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014338 [exp] 1229 / 0 AT4G27220 342 / 2e-101 NB-ARC domain-containing disease resistance protein (.1) Potri.T045000 [exp] 1220 / 0 AT4G27220 322 / 1e-94 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014346 [exp] 1207 / 0 AT4G27220 317 / 1e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.018G136700 [exp] 1182 / 0 AT4G27190 323 / 4e-94 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014304 [exp] 1179 / 0 AT4G27220 283 / 2e-80 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024173 [exp] 152 / 3e-37 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 151 / 9e-37 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 145 / 1e-34 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10018937 [exp] 138 / 6e-33 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 137 / 1e-32 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 137 / 3e-32 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10028639 [exp] 135 / 4e-32 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 134 / 1e-31 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 132 / 5e-31 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 130 / 2e-30 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01637 [poplar] [flax] ATPase_2 ATPase domain predominantly from Archaea CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G137900.2 pacid=42800454 polypeptide=Potri.018G137900.2.p locus=Potri.018G137900 ID=Potri.018G137900.2.v4.1 annot-version=v4.1 ATGGTTCTCCCAAAAGGTCCATTTTGGGAGCATGTTGAAGATATGAATGACGGTAGCATGAGGTGTAAGTTTTGTGGGCATTTATTTGCCAAGGACACTT CCATTTCGAGGATCAAATGCCATTTGTCAGGGATGAGAGGGCGTGGTGTTAAAATTTGTAAAGATGTTCCAGAAGAAGTTCAGGATGCAGCCCTAGCAAC AATTGATGGACCTCCAGAAAAAACCCTTAAAACTGTAGCAGGCTCAAGCAATAACGAGGTCACCAATGCAATTGCAGCTTCTGCGCAAGAACAGAACAGT GAAGTGATACGTGTAGAAATGGCACAACAAGGAGAAGCTTTTTACCCTGGAACACTCGAAGATTGGATGGATAGCATCATTGATAACGAGATCGAGCTTG TGTTGGTAAGTAGTTCTCCTAAAGAGCTTCCGCGTGATGCTTTTGAGATTATATCTGGAACAGAACAAGTGCAGCATCGGGAGAGAGGTAGCTCTCATGA GAGGTCATCAATTAATCAAGCTGATCAGCCTCGAGGAGATTCATCCCAACCAACTGATCTATTGTGTCTTGGGCTTGGAAGATATTGTGATCAAATATAT TTTCCACCAGTAAACAATGATGTGATTATGGATGATGTGCGGAACATGGTTAGAGTGAGAATAGAACCAGAGGAGGAGGATGTGGTGAATAATAGTGGAA GATTAGTGCAGCCTGGCACAGGAGCTAGCTCTTCTGAAGACCTTACATACAACACAAGTGAGACTAGAGGAGATCCATTACCCACTAACTCTACAACGTT AGTGGGTCGAGCATTTGTAGAGAATGGGAACGTGGTATGGTCCTGGTTAATGGAAGATAAAGTCTCAACCATTGGTATTTATGGGATGGGGGGAGTTGGT AAAACTGCAATGCTGAAGCATATCTATAATGAGCTTCTAAAAAGACCAGACATTTGTCAACATGTTTATTGGGTGATCGTGTCTCGTGATTTTAGCATTA AAAGATTGCAGCACAGTATCGCAAGACGTATAGGTTTAAAACATTTCAATGAAAAGGAGGAGTTGCACAGAGCTGTCAAATTGTCAAAAGAACTAATAAA GAAACAAAAATGGATTCTCATTTTAGATGATTTGTGGAACTCTTTTGAGCTACACGAAGTGGGAATTCCTGTCCCGTTGAAAGGATGTAAGCTGATTATA ACTACTCGATCAGAAAAGGTTTGTCATCAGATGACTTGCCAGCACAAAATCAAAGTGAAGCCACTTTCTGACGAAGAAGCTTGGACTTTGTTCACAAAGA AATTTGAATATGACATTCCACTTTCTCCAAAAGTGGAACGAATTGCAAAACACATCACCAGGGAGTGTGATTGTTTGCCGCTAGGAATTATAACAATGGC TAGATGCATGAAGGGGGTGGATGACACACACGAGTGGAAGAATGCTTTAGAGGACATGAGACAATCAAGAGTTGGACAAGATGACATGAAAAAGGTGTTC CGGACTCTGAGATTTAGTTATACCCGCCTAAATGATTCAGCTTTGCAACGATGTTTTTTGTACTGTGCATTATTTCCTGAAAACTTTGTGATCCCTAAAG ACTATTTGATAGCTTATTTCATTGACGAGGGAGTGATAAAAGGGCAGAAGAGCAGGGAGGCAGAATTTGACAAAGGTCATTCGATGCTTAATAGACTTGA AAATGTCTGTTTATTGGAAATAATTAATGATGGTAGATGTGTCAAGATGCATGACTTGATTAGGGACATGGCCATCCAAATAGTAGAAGAAGACTCTCAA GGCATGGTCAAAGCAGGTGCACAACTGAAAGAATTACCGGATGCAGAGGAGTGGACAGAGAATCTTACAACAGTTTCATTAATGCATAACCAAATTGAAG AAATTCCTTTCTGCCATTCACCAAGGTGTCTGAATCTGTCAATCTTATTGCTATGTCATAATTACAGGTTGCGATTTGTGGCAGATTCATTTTTCAAGAA ATTGCATGGGCTCAACATCCTTGATCTGTCTCACACAAATATTGAAAAATTGCCTAATTCTGTCTCTGATTTGGTCAAACTCACTTCATTGCTGCTCTCA AATTGTAAGAGGTTAAGGCATGTACCATCATTAAAAAATCTCGGGGAACTAAAGAGGTTAGATCTCTCTAGTACTCAGGCACTTAAAAAGATGCCTCAAG GCATGGAATTTCTATCCAACCTGAGGTGTCTTAGAATGAATGGATGTGGTAACAAGAAGTTTCCTAGTGGGATATTACCTAAACTCTCTCACTTGCAAGT CTTTGTGCTAGAGGTGGAGTTAATTTGTGTTCCAGTAACAGTTAAAGGAAAGGAAGTAGGATGCTTGAGGAAGTTGGGAACTTTGGAATGCCATTTTGAA GGTCACTCTGACTATGTGGAGTTTCTCAAATCTCGGGAGAAGAACCAAGCACTAAGCAAATACAAAATTTTTGTAGGACAATTCAAGGAGTACGATGTAA GAACATATTGTAGTAATAAGACAGTTGGGTTGGGTAATTTGAGTGTCAACAGAGATGGAGATTTTCAGGTCTGGTTCCCAAATGATATTCAAGAACTGAT CATTGAAAAGTGTGATGATGCAACTAGTTTGTGTGATGTTTTCTCTCTAAAGAAGTGTTCAATTGAATTGGAGGTCATCTCCATTTTGAATTGCAATAGC ATGGAGAGCTTGGTTTTATCTTCTTGGTTCTGCTCTGCTACACTTCCATCTCCATCGTATAACAGTATATTTTCTGGTCTTAAAAGGTTTAATTGTTCTG GTTGTAAGAGCATGAAGAAGTTATTTCCTCTTGTCTTGCTGCCAAGCCTCGTAAACCTGGAAGAGATTAGAGTTAAGCATTGTGAGAAAATGGAGGAGAT AATAGGTGGAACGAGATCAGATGAAGAAGGGGTTATGGGTGAAAAAAGCAGCAACAACGAATTCAAACTCCCCAAGTTAAGAATTTTGTACTTGTCTGAC TTACCAGAATTGAAAAGCATTTGCAGTGCAGAATTGATCTGCGATTCTCTCAAAGCAATTGAAGTAATAAATTGTCAGAAGCTAAAGAGGTTCCCAATTT GTCTTCCATTACTTGAAAATGGCCAGCCATCTCCTCCCCCTTCTCTTGAAAAAATCAAAGTACATCCAAAAGAATGGTGGAAGTCAATGGTGGAGTGGGA GCATCCTAACGCTAAGGATGTCCTCTGTCCCTTTGTAGAGTTTTCTCAACCACAAGTAAGGAAGCAAGACGAAGACAAGTGA
AA sequence Show only first row Show all	>Potri.018G137900.2 pacid=42800454 polypeptide=Potri.018G137900.2.p locus=Potri.018G137900 ID=Potri.018G137900.2.v4.1 annot-version=v4.1 MVLPKGPFWEHVEDMNDGSMRCKFCGHLFAKDTSISRIKCHLSGMRGRGVKICKDVPEEVQDAALATIDGPPEKTLKTVAGSSNNEVTNAIAASAQEQNS EVIRVEMAQQGEAFYPGTLEDWMDSIIDNEIELVLVSSSPKELPRDAFEIISGTEQVQHRERGSSHERSSINQADQPRGDSSQPTDLLCLGLGRYCDQIY FPPVNNDVIMDDVRNMVRVRIEPEEEDVVNNSGRLVQPGTGASSSEDLTYNTSETRGDPLPTNSTTLVGRAFVENGNVVWSWLMEDKVSTIGIYGMGGVG KTAMLKHIYNELLKRPDICQHVYWVIVSRDFSIKRLQHSIARRIGLKHFNEKEELHRAVKLSKELIKKQKWILILDDLWNSFELHEVGIPVPLKGCKLII TTRSEKVCHQMTCQHKIKVKPLSDEEAWTLFTKKFEYDIPLSPKVERIAKHITRECDCLPLGIITMARCMKGVDDTHEWKNALEDMRQSRVGQDDMKKVF RTLRFSYTRLNDSALQRCFLYCALFPENFVIPKDYLIAYFIDEGVIKGQKSREAEFDKGHSMLNRLENVCLLEIINDGRCVKMHDLIRDMAIQIVEEDSQ GMVKAGAQLKELPDAEEWTENLTTVSLMHNQIEEIPFCHSPRCLNLSILLLCHNYRLRFVADSFFKKLHGLNILDLSHTNIEKLPNSVSDLVKLTSLLLS NCKRLRHVPSLKNLGELKRLDLSSTQALKKMPQGMEFLSNLRCLRMNGCGNKKFPSGILPKLSHLQVFVLEVELICVPVTVKGKEVGCLRKLGTLECHFE GHSDYVEFLKSREKNQALSKYKIFVGQFKEYDVRTYCSNKTVGLGNLSVNRDGDFQVWFPNDIQELIIEKCDDATSLCDVFSLKKCSIELEVISILNCNS MESLVLSSWFCSATLPSPSYNSIFSGLKRFNCSGCKSMKKLFPLVLLPSLVNLEEIRVKHCEKMEEIIGGTRSDEEGVMGEKSSNNEFKLPKLRILYLSD LPELKSICSAELICDSLKAIEVINCQKLKRFPICLPLLENGQPSPPPSLEKIKVHPKEWWKSMVEWEHPNAKDVLCPFVEFSQPQVRKQDEDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.018G137900 [exp]	0	1
AT1G72510			Protein of unknown function (D...		Potri.003G067800 [exp]	4.24	0.6637
AT4G22990			Major Facilitator Superfamily ...		Potri.003G120600 [exp]	6.32	0.6432
AT2G44430			DNA-binding bromodomain-contai...		Potri.009G023100 [exp]	7.48	0.6723	BRD908
AT5G67170			SEC-C motif-containing protein...		Potri.005G140500 [exp]	8.24	0.6663
AT1G72160			Sec14p-like phosphatidylinosit...		Potri.019G079500 [exp]	19.44	0.6106
AT3G14830			unknown protein		Potri.003G026500 [exp]	19.59	0.6431
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Potri.003G056000 [exp]	20.29	0.6518
AT5G04480			UDP-Glycosyltransferase superf...		Potri.008G029400 [exp]	20.49	0.6086
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Potri.006G218900 [exp]	21.90	0.6302
AT5G49900			Beta-glucosidase, GBA2 type fa...		Potri.019G072800 [exp]	21.93	0.6138

Compare expression of checked genes

Potri.018G137900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.