Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MET1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49160 1800 / 0 MET2, DMT1, DMT01, DDM2, METI, MET1 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) AT4G08990 1731 / 0 DNA (cytosine-5-)-methyltransferase family protein (.1) AT4G14140 1718 / 0 MET02, DMT2, DMT02, MET2 DNA METHYLTRANSFERASE 02, DNA methyltransferase 2 (.1.2) AT4G13610 1535 / 0 MEE57 maternal effect embryo arrest 57, DNA (cytosine-5-)-methyltransferase family protein (.1) AT1G69770 232 / 5e-63 CMT3 chromomethylase 3 (.1) AT4G19020 225 / 3e-59 CMT2 chromomethylase 2 (.1) AT1G80740 201 / 4e-53 DMT4, CMT1 DNA METHYLTRANSFERASE 4, chromomethylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T046100 [exp] 3151 / 0 AT5G49160 1802 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.004G134000 [exp] 2883 / 0 AT5G49160 1805 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.001G009600 [exp] 229 / 3e-61 AT1G69770 852 / 0.0 chromomethylase 3 (.1) Potri.003G100000 [exp] 224 / 5e-59 AT4G19020 1017 / 0.0 chromomethylase 2 (.1) Potri.003G215800 [exp] 86 / 1e-16 AT1G69770 221 / 7e-62 chromomethylase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004295 [exp] 2144 / 0 AT5G49160 1783 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Lus10019220 [exp] 2056 / 0 AT5G49160 1706 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Lus10014315 [exp] 226 / 1e-60 AT1G69770 836 / 0.0 chromomethylase 3 (.1) Lus10026024 [exp] 223 / 9e-60 AT1G69770 824 / 0.0 chromomethylase 3 (.1) Lus10010796 [exp] 213 / 3e-57 AT4G19020 790 / 0.0 chromomethylase 2 (.1) Lus10017720 [exp] 211 / 7e-56 AT1G69770 855 / 0.0 chromomethylase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00145 [poplar] [flax] DNA_methylase C-5 cytosine-specific DNA methylase CL0063 [poplar] [flax] PF01426 [poplar] [flax] BAH BAH domain CL0063 [poplar] [flax] PF12047 [poplar] [flax] DNMT1-RFD Cytosine specific DNA methyltransferase replication foci domain
Representative CDS sequence Show only first row Show all	>Potri.018G138000.1 pacid=42801692 polypeptide=Potri.018G138000.1.p locus=Potri.018G138000 ID=Potri.018G138000.1.v4.1 annot-version=v4.1 ATGGGATCTTCATCAATATTGGATACAACAACAAATGATCCAGTTGATAATACTATTTCTTCTTCATCATCTGTAGGTATGAGGAAGAACAAAAAAGGGA AACAAAAATCTTCAGTGTCTAATGTAAAGAAAGAAGTGCCAGAAAAAAACACAAAAGGGAAGAAGAGAAATTCCCCTGATACCAACAAGGAAGAGCCTAC TGGTGGCGATGGTTCACTAAAAAGGCCTAAGAGAGCTGCTGCATGCAAAGATTTCAAGGAGAAATCTGTACGATTGCATGAAGAGAAGTCTTATGTTGTT GAATCAAAGAAAGAACAAGTTGTCGATGAAGAAATTCTAGCTGTTCGTTTGACTCAAGGGCAAGAAGAGGGTCGCCCAAACAGGAGATTGATTGATTTTG TTGTGCATGATGCAAATGGCAACCCACAGCCCTTGGAGATGGTTGAAGTTGATGATATGTTTATCTCTGGCATTATAATGCCTCACGAGGAAAGCCTTGA CAAGGAAAAAGAAGTGCATGTTAGGTGTGATGGCTTTGGAAGGATAGAAGCATGGGATATCTCTGGTTATGAAGATGGATCCCCAGTCATTTGGCTTAGT ACTGAAGTGGCAGATTATGACTGCATTAAGCCTGCTGGTGGCTACAAGAAGTTCTTTGATCATTTCTTCCAGAAGGCACTTGCTTGTGTTGAAGTCTACA AAAAACTCTCAAGATTCTCTGGAGGAAACCCTGAATTCACCCTTGATGAGTTGCTTGCTGGGGTTGTGCGAGCAATGAGTGGAAATAAGTGTTTCTCTGG TGCAGTATCCATCAAGAATTTCCTCATTTCTCAGGGTGAATTTATTTATCACCAAATAATTGGTTTGGATGAGACTTCCACAAAGAATGATAAGAAATTT GCAGACTTGCCTGTTCTTGTAGCCTTGAGAGATGAAAGTCGCAATCATGGAAATGTTCTGATAGCAAAAGCAGCAAATTCTGGTGGGAACTTGGTGATTG GTCCAGAATCTGTGGATGGTGCTGTTGTGAATCAGTCTAACCAATCCAGTACCACAGTTGAGGAAGACGAGGATGCAAAGTTAGCAAGATTATTGCAGGA TGAAGAGTATTGGCAGTCTAATATGAGGCAGAAGAAAAGTCGTGGTTCAGTTTCTGCATCCAACACAATCTACATCAAAATTAATGAAGATGAGATTGCA AATGACTACCCTCTCCCCGCGTTTTACAAACACTCTAATGAAGAAACCGATGAGTATATAGCTGTTGCAAGTGATGATGTAATTGACCACCCTGATGATC TCCCTAGAAGAATGCTTCATAACTGGTCACTTTATAACTCAGACTCAAGGTTGATTTCTTTGGAGCTTCTTCCAATGAAACCTTGTGAAGACATTGATGT CACCATCTTTGGATCAGGAAGTATGACTGAAGATGACGGAAGCGGATTCTGTCTTGATGATGGTCCTGATCAGTCTTCTTCAAGGGGTTTGGAGGCTCAG GATGACATGGGTTTGCCGATATTTTTGAGTGCGATAAAGGAGTGGATGATTGAGTTTGGATCATCAATGATTTTTATATCATTACGCACGGACATGGCCT GGTATAGACTTGGAAAGCCATCAAAACAATATGCTTCCTGGTATAAGCCAGTCCTAAAAACAGTTAAGCTTGCAAGAACCATCATTACATTGTTGAAGGA GCAAAGTCGAGTATCACGGCTTTCTTTTGCAGATGTAATCCGGAAAGTGTCTGAGTTCAAGAAGGATCATCATGCTTATATTTCTTCTGATCTAGCAGCT GTTGAGAGGTACGTGGTAGTGCATGGACAGATAATACTACAGCTTTTTGCTGAGTTTCCAGATCAGAAGATCAAGAAATGTGCTTTTGTGGTCGGTTTGA CTCGTATGATGGAGGAGAGGCACCATACTAAATGGGTAGTGAACAAAAAAGCAATTGTGCAAAAGTGTCATTCCAATTTGAATCCTCGGGCTGCAATGGA TACTGTTGCTTCTGGAGCGTCCAAGAGGAAGCTTATGCAGGCAACAACAACAAGACTGATCAACAGAATATGGGGGGAATATTATTCAAACTATTCTCCA GAGGATTTGAAAGAGGGAAATGATTGTGATGTAAAAGAAGAAGATGAACTTGAGGAACAGGATGAAAATGAAGATGATGATAAAGAGGTGGTGGTAGAGA AAACACTAAAACCTTATTCAGTGTTTGAACATTGTAAATCCCATACTTCACAAAAAGAGGTAAGATGGGATGGGAATCCTGTAAGAAAAATATCTTCTGG AGAAGACATTTACAAGCAAGCCATTGTTTGTGGACAGGTCATTGTGGTGGGGGCTGCTGTCTTAGTGGAGGTTGATGAACCAGATGAACTTCCTGCCATT TATTTTGTGGAGTACATGTTTGAAACAAGAAATGGAAGTAAAATGTTTCACGGGAGAATGATGAAGTGGGGATCTGAGACAGTTCTTGGTAACACTGCCA ATGATAGAGAGGTTTTCTTAACAAATGAATGCATGAATTATAAACTACAGGATGTTAAGCAAACAATAATTCTGGAAGTTCGAAAAAGGCCTTGGGGACA TCATCACAGGAAAGATAATGCCAATGCTGATAGAATTGATAGGGAAAAGGCAGAAGAGAGGAAAAAGAAAGGATTGCCACTAGAATATTACTGTAAAAGC TTGTACTGGCCAGAAAGGGGTGCTTTCTTCACTCTTCCATTTGATACTATGGGTCTTGGCTCTGGTGTCTGCCACTCTTGTAACTTAAAAATATCTGAAG AAGACAAGAATATTTCCAAAGTGAATTCTTCTCAAACAGGATTTTCATACAAGGGAACTGAGTACTCAGTCCATGATTTTGTCTATGTGAGCCCTCATCA ATTTGCCGTGGAAAGTGGGGAGACTGAAACTTTTAAGGGTGGAAGGAATGTTGGATTGAAGCCTTATGCTGTGTGCCAGTTATTGGAAGTTGTTCCAATG GAAACAAAACAATCTGAAACAAGATCCACTGAGGTCAAAGTTCAAAGATTTTTCAGACCAGATGATATTTCACCTGAAAAGGCATATTGTTCTGATATTC GTGAGATATATTATAGTGAAGAAACACATCTTTTATCTGTTGAGGTGATTGAAGGGAAATGTGAAGTCAGAAAGAAAATTGATATTCCCACATGCAGTGC TCCTGCAATCTTTGATCATACCTTCTTCTGCGAGCACATGTATGATCCTTCCAATGGGTCCCTCAAGCAGCTACCAGCTCATATCAAATCAAAGTTTTCA GCTGTGAGTAAAGATGGTGATGTTGCAAGTAGAAAGAGAAAGGGAAAGTCTAAAGAAGGAGAAAATGATACAGAAGATGACAAACAATTGGAAGCATCTC CAGAGTACCGTTTGGCCACTTTGGATATTTTTGCTGGTTGTGGTGGCTTGTCTGAGGGATTGCAGCAAGCTGGTGTCTCAACAACCAAGTGGGCTATTGA ATATGAAGAGCCTGCTGGGGAAGCATTTAAACTCAATCATGCAGAATCATTAATGTTTATTAATAATTGCAATGTGATCCTCAGGGCTGTGATGGAGAGG TGTGGAGATGCAGATGACTGTATTTCTACTTCTGAGGCTGCTAAAATGGCTTCATCACTTGATGCAAAGGTGATCGATGGTTTGCCATTGCCAGGGCAGG TGGATTTCATCAATGGAGGGCCTCCATGTCAGGGCTTCTCTGGAATGAATAGGTTTAATCAGAGCACTTGGAGTAAAGTTCAATGTGAGATGATCTTAGC ATTCTTATCCTTTGCTGATTACTTCCGCCCAAAGTATTTCCTCTTAGAGAATGTGAGGAACTTTGTATCTTTCAATAAAGGACAGACTTTCCGTTTAACT ATTGCTTCTCTTCTTCAGATGGGTTATCAGGTGAGATTTGGAATTTTGGAGGCCGGAGCATATGGAGTTTCTCAGTCACGCAAACGTGCCTTTATATGGG CAGCCTCCCCTGAGGAGATACTCCCAGAATGGCCAGAGCCAATGCATGTTTTTGCTGCCCCAGAGTTAAAAATAACATTGTCTGAGAAGTCACAATATGC TGCTGTTAGGAGTACTGCTTATGGAGCCCCTTTCCGTGCAATAACTGTCAGAGATACAATTGGTGATCTCCCAGATGTGGCGAATGGTGCTTCTAAGACA AATTTGGAGTATGGAAATGATCCTATCTCTTGGTTTCAAAAGAAAATTCGAGGCGACATGGTTGTCTTGACTGACCATATATCAAAAGAAATGAATGAGC TGAATCTTATTAGATGCAAGAATATCCCAAAGCGGCCAGGTGCTGATTGGCGTGATCTCCCAGATGAAAAGGTCAAATTGTCTACTGGGCAAATGGTTGA TTTGATACCATGGTGCCTTCCAAACACAGCTAAACGACATAATCAGTGGAAGGGGCTATTTGGAAGATTGGATTGGGAAGGGAACTTCCCAACATCAATA ACAGATCCCCAGCCAATGGGTAAGGTGGGGATGTGCTTTCACCCTGAGCAGGACAGGATTCTTACTGTTCGTGAATGTGCACGATCTCAAGGATTCCCAG ATAACTATCAGTTTTTCGGTAACATTCAACACAAGCATCGGCAAATTGGAAATGCTGTTCCTCCTCCTCTAGCATATGCGTTGGGAAGGAAACTTAAGGA AGCACTGGATAGTAAGAGGCAGAAATAG
AA sequence Show only first row Show all	>Potri.018G138000.1 pacid=42801692 polypeptide=Potri.018G138000.1.p locus=Potri.018G138000 ID=Potri.018G138000.1.v4.1 annot-version=v4.1 MGSSSILDTTTNDPVDNTISSSSSVGMRKNKKGKQKSSVSNVKKEVPEKNTKGKKRNSPDTNKEEPTGGDGSLKRPKRAAACKDFKEKSVRLHEEKSYVV ESKKEQVVDEEILAVRLTQGQEEGRPNRRLIDFVVHDANGNPQPLEMVEVDDMFISGIIMPHEESLDKEKEVHVRCDGFGRIEAWDISGYEDGSPVIWLS TEVADYDCIKPAGGYKKFFDHFFQKALACVEVYKKLSRFSGGNPEFTLDELLAGVVRAMSGNKCFSGAVSIKNFLISQGEFIYHQIIGLDETSTKNDKKF ADLPVLVALRDESRNHGNVLIAKAANSGGNLVIGPESVDGAVVNQSNQSSTTVEEDEDAKLARLLQDEEYWQSNMRQKKSRGSVSASNTIYIKINEDEIA NDYPLPAFYKHSNEETDEYIAVASDDVIDHPDDLPRRMLHNWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGSMTEDDGSGFCLDDGPDQSSSRGLEAQ DDMGLPIFLSAIKEWMIEFGSSMIFISLRTDMAWYRLGKPSKQYASWYKPVLKTVKLARTIITLLKEQSRVSRLSFADVIRKVSEFKKDHHAYISSDLAA VERYVVVHGQIILQLFAEFPDQKIKKCAFVVGLTRMMEERHHTKWVVNKKAIVQKCHSNLNPRAAMDTVASGASKRKLMQATTTRLINRIWGEYYSNYSP EDLKEGNDCDVKEEDELEEQDENEDDDKEVVVEKTLKPYSVFEHCKSHTSQKEVRWDGNPVRKISSGEDIYKQAIVCGQVIVVGAAVLVEVDEPDELPAI YFVEYMFETRNGSKMFHGRMMKWGSETVLGNTANDREVFLTNECMNYKLQDVKQTIILEVRKRPWGHHHRKDNANADRIDREKAEERKKKGLPLEYYCKS LYWPERGAFFTLPFDTMGLGSGVCHSCNLKISEEDKNISKVNSSQTGFSYKGTEYSVHDFVYVSPHQFAVESGETETFKGGRNVGLKPYAVCQLLEVVPM ETKQSETRSTEVKVQRFFRPDDISPEKAYCSDIREIYYSEETHLLSVEVIEGKCEVRKKIDIPTCSAPAIFDHTFFCEHMYDPSNGSLKQLPAHIKSKFS AVSKDGDVASRKRKGKSKEGENDTEDDKQLEASPEYRLATLDIFAGCGGLSEGLQQAGVSTTKWAIEYEEPAGEAFKLNHAESLMFINNCNVILRAVMER CGDADDCISTSEAAKMASSLDAKVIDGLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFRPKYFLLENVRNFVSFNKGQTFRLT IASLLQMGYQVRFGILEAGAYGVSQSRKRAFIWAASPEEILPEWPEPMHVFAAPELKITLSEKSQYAAVRSTAYGAPFRAITVRDTIGDLPDVANGASKT NLEYGNDPISWFQKKIRGDMVVLTDHISKEMNELNLIRCKNIPKRPGADWRDLPDEKVKLSTGQMVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI TDPQPMGKVGMCFHPEQDRILTVRECARSQGFPDNYQFFGNIQHKHRQIGNAVPPPLAYALGRKLKEALDSKRQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Potri.018G138000 [exp]	0	1	MET1.1
AT1G79890			RAD3-like DNA-binding helicase...		Potri.001G182600 [exp]	2.00	0.7693
AT3G60450			Phosphoglycerate mutase family...		Potri.014G054800 [exp]	10.58	0.7028
AT1G60560			SWIM zinc finger family protei...		Potri.006G245800 [exp]	12.00	0.6776
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.018G049700 [exp]	12.84	0.6904
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Potri.008G216600 [exp]	20.49	0.6724
AT5G59600			Tetratricopeptide repeat (TPR)...		Potri.001G014900 [exp]	21.44	0.7583
AT1G20370			Pseudouridine synthase family ...		Potri.002G014400 [exp]	32.61	0.7168
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G130600 [exp]	35.35	0.7130
AT3G26782			Tetratricopeptide repeat (TPR)...		Potri.001G322100 [exp]	39.34	0.7063
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Potri.012G060000 [exp]	39.62	0.6907	Pt-MSH2.1

Compare expression of checked genes

Potri.018G138000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.