Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49890 935 / 0 ATCLC-C, CLC-C chloride channel C (.1) AT5G33280 746 / 0 Voltage-gated chloride channel family protein (.1) AT5G40890 659 / 0 ATCLCA, CLCA, ATCLC-A CHLORIDE CHANNEL-A, chloride channel A (.1.2) AT3G27170 645 / 0 ATCLC-B, CLC-B chloride channel B (.1) AT5G26240 435 / 5e-141 ATCLC-D, CLC-D chloride channel D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T046200 [exp] 1325 / 0 AT5G49890 947 / 0.0 chloride channel C (.1) Potri.004G228300 [exp] 983 / 0 AT5G49890 983 / 0.0 chloride channel C (.1) Potri.003G001500 [exp] 983 / 0 AT5G49890 950 / 0.0 chloride channel C (.1) Potri.006G064000 [exp] 781 / 0 AT5G33280 1181 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.018G124100 [exp] 774 / 0 AT5G33280 1167 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.001G331700 [exp] 655 / 0 AT3G27170 1259 / 0.0 chloride channel B (.1) Potri.010G090100 [exp] 452 / 1e-147 AT5G26240 1149 / 0.0 chloride channel D (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007433 [exp] 974 / 0 AT5G49890 1190 / 0.0 chloride channel C (.1) Lus10024466 [exp] 971 / 0 AT5G49890 1189 / 0.0 chloride channel C (.1) Lus10038118 [exp] 739 / 0 AT5G33280 1140 / 0.0 Voltage-gated chloride channel family protein (.1) Lus10012526 [exp] 665 / 0 AT3G27170 1264 / 0.0 chloride channel B (.1) Lus10002453 [exp] 474 / 4e-156 AT5G26240 1278 / 0.0 chloride channel D (.1) Lus10010531 [exp] 457 / 2e-149 AT5G26240 1242 / 0.0 chloride channel D (.1) Lus10041567 [exp] 179 / 1e-50 AT3G27170 456 / 1e-156 chloride channel B (.1) Lus10041568 [exp] 150 / 3e-41 AT5G40890 273 / 1e-87 CHLORIDE CHANNEL-A, chloride channel A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain PF00654 [poplar] [flax] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Potri.018G138100.6 pacid=42801312 polypeptide=Potri.018G138100.6.p locus=Potri.018G138100 ID=Potri.018G138100.6.v4.1 annot-version=v4.1 ATGAGAGAAAGAAAAATGGACTTGGATAACAGGGCCACTCATGGACTGCATACTGTTAAAGAAGAAGATGTGGAGGGAGACATTGAAAATGATGCCAAAG GAATACTAAATTCGTACAACGGTGCTTACAGTACTGAACCCCTCTTGGTGAAAAGGAGGAATACAACATCCCAGACTGCCATTGTTGGTGCCAACATTTC TCTTATTGAAAGCCTTGACTACGAGATTGCTGAAAATGAATTATTTAAACAAGATCGGAGATCAAGAAAGAAAGTTCAGATATTTCAGTATATTTTACTG AAGTGGGCATTTGCACTTCTTATTGGCCTTTTCACAGGACTTGTTGGCTTTTTAAATAATATCGCAGTTGAGAACATATCTGGTTTCAAGTTGTTGCTGA CTAATAAGCTCATGAGAAAGCAACAATATTACAAGGCTTTTGCAGCATTTGCTGGTTGCAACATGGTGTTGGCGGCTGCTGCTGCAGCTCTATGCGCTTT CATTGCTCCAGCAGCAGCAGGTTCTGGTATTCCTGAAGTGAAAGCCTATCTTAATGGCATTGATGCTCATTCTATACTGGCTCCTGGTACCCTTTTTGTA AAGATTTTTGCTTCTATTCTCGGTGTTTCTGCTGGATTTGTTGTTGGTAAAGAAGGGCCTATGGTTCACACTGGTGCATGCATAGCCTCTTTATTAGGGC AGGGGGGTTCTCGCAAGTACCATTTGACTTGGACATGGCTCAGATATTTCAAAAATGATCGTCAGAGACGAGATTTAATCACTTGCGGAGCTGCTGCTGG TGTGGCTGCTGCTTTTCGTGCTCCAGTTGGAGGCGTTCTTTTCGCTCTTGAAGAAGCAGCTTCATGGTGGCGGAGTGCTCTTCTTTGGAGAACTTTTTTC ACTACAGCAGTGGTTGCTATAGTTTTGAGAGCTTTTATGGAATTTTGCGCTACCGGAAAGTGTGGGCTTTTTGGGAAAGGAGGTCTAATAATGTATGATG TGAGTTCAGAAAAGGTGCAATATAGTGGCCCGGATGTTTTAGCTGTGATACTCTTAGGCATCATCGGGGGCATTTTTGGAAGCTTGTATAACTATCTTGT GGATAAGGTTCTCCGTACTTACAGCATCATTAACGAAAAAAGTGCTGCATTTAAAATCTCACTTGTTATTGCCATCGCCCTGTTGACATCTTGTTGTTCT TACGGCCTGCCTTGGTTCGGGAGGTGCATCCCCTGCCCTACTCATATAACAGTGAGTTGTCCCAACACTGATGAATCTGGAAATTACAAAAGTTTTCAGT GCCCACCAGGTTATTACAATGACATTGCCTCCCTTTTTCTAAGCACTAATGATGATGCTATTCGCAACCTCTTTAGCGCCAGCACTAAAAAAGAATTTCG TATATCCACTCTCTTCCTCTTCTTCTCTGCTGTTTATTGTCTTGGCATTGTTACATATGGAATTGCTATCCCATCTGGACTTTTCATCCCCGTTATTTTA GCTGGAGCTTGCTATGGCCGTCTTGTTGGGAGACTATTTAGATCCATCTCTAACCTTGACACCGGTCTCTTTGCCTTACTTGGAGCTGCATCCTTCCTTG GTGGTACCATGAGAATGACAGTTTCCCTTTGTGTAATACTGCTCGAACTCACTAATGATTTATTGTTGCTTCCCCTTGTGATGTTGGTTCTCCTTATCTC AAAAACCGTGGCTGATAACTTCAACAAGGGTGTCTATGACCAAATTGTGAAATTGAAAGGATTGCCTTACATGGAGGCCCATGCAGAACCTTACATGAGG CATTTGGTTGCACGTGATGTTGTCTCTAGTCCATTGGTAACTTTTCTTGGTATTGAAAAGGTGGGCAATATACTGCATGCTTTGAGGACAACTGGACATA ATGGGTTCCCAGTGATTGATGAACCACCTTTCTCAGATGCACCAGAACTGTGCGGCCTTGTCTTGAGGTCACATTTGCTTGTTTTGCTTAAAGGCAAGAA TTTTTCAAGGGAAAGGATACCTGCTGGTCAAGAGATCTTGCGTAGATTTGCAGTATTTGATTTAGCTAAAGCAGGATCTGGGAAGGGTGTCAAGTTAGAG GATCTGGATATTGAAGAGGAAGAGATGGAGATGTATGCAGATCTTCATCCAATTACCAATGCATCCCCGCACACCGTGGTTGAGACAATGTCACTTGCCA AAGCTGCAATTCTCTTTCGACAAATTGATCTCAGGCACATGTGTGTAGTGCCAATAAGTCAAGGGAGACCTCCAATTGTTGGGATTTTGACTCGACATGA CTTCATGCCAGAGCATATCTTGGGACTCTACCCTCATATCAAGCCTCACAAGTAG
AA sequence Show only first row Show all	>Potri.018G138100.6 pacid=42801312 polypeptide=Potri.018G138100.6.p locus=Potri.018G138100 ID=Potri.018G138100.6.v4.1 annot-version=v4.1 MRERKMDLDNRATHGLHTVKEEDVEGDIENDAKGILNSYNGAYSTEPLLVKRRNTTSQTAIVGANISLIESLDYEIAENELFKQDRRSRKKVQIFQYILL KWAFALLIGLFTGLVGFLNNIAVENISGFKLLLTNKLMRKQQYYKAFAAFAGCNMVLAAAAAALCAFIAPAAAGSGIPEVKAYLNGIDAHSILAPGTLFV KIFASILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTWTWLRYFKNDRQRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFF TTAVVAIVLRAFMEFCATGKCGLFGKGGLIMYDVSSEKVQYSGPDVLAVILLGIIGGIFGSLYNYLVDKVLRTYSIINEKSAAFKISLVIAIALLTSCCS YGLPWFGRCIPCPTHITVSCPNTDESGNYKSFQCPPGYYNDIASLFLSTNDDAIRNLFSASTKKEFRISTLFLFFSAVYCLGIVTYGIAIPSGLFIPVIL AGACYGRLVGRLFRSISNLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLISKTVADNFNKGVYDQIVKLKGLPYMEAHAEPYMR HLVARDVVSSPLVTFLGIEKVGNILHALRTTGHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKGKNFSRERIPAGQEILRRFAVFDLAKAGSGKGVKLE DLDIEEEEMEMYADLHPITNASPHTVVETMSLAKAAILFRQIDLRHMCVVPISQGRPPIVGILTRHDFMPEHILGLYPHIKPHK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.018G138100 [exp]	0	1
AT3G05327			Cyclin family protein (.1)		Potri.013G023000 [exp]	3.16	0.8966
AT1G11300			protein serine/threonine kinas...		Potri.004G027533 [exp]	3.46	0.9072
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.009G108832 [exp]	4.89	0.8961
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Potri.015G133100 [exp]	5.47	0.9027	AAT1.2,PtrCAT12
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.009G108600 [exp]	6.00	0.9007
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Potri.006G057200 [exp]	10.81	0.8789
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Potri.004G020400 [exp]	18.33	0.8874	ATML1.2
					Potri.006G028101 [exp]	22.44	0.8694
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Potri.006G224600 [exp]	23.23	0.8033
AT1G18870		ATICS2, ICS2	ARABIDOPSIS ISOCHORISMATE SYNT...		Potri.012G070000 [exp]	28.91	0.8559

Compare expression of checked genes

Potri.018G138100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.