Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16130 1003 / 0 ATISA1, ARA1 arabinose kinase (.1) AT3G42850 962 / 0 Mevalonate/galactokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G145700 [exp] 1345 / 0 AT4G16130 1435 / 0.0 arabinose kinase (.1) Potri.018G003100 [exp] 1027 / 0 AT4G16130 1660 / 0.0 arabinose kinase (.1) Potri.008G102800 [exp] 43 / 0.0006 AT3G06580 793 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020178 [exp] 430 / 2e-138 AT4G16130 625 / 0.0 arabinose kinase (.1) Lus10026983 [exp] 427 / 6e-138 AT4G16130 1013 / 0.0 arabinose kinase (.1) Lus10016321 [exp] 44 / 0.0002 AT3G06580 338 / 8e-115 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF10509 [poplar] [flax] GalKase_gal_bdg Galactokinase galactose-binding signature CL0113 [poplar] [flax] GT-B PF13528 [poplar] [flax] Glyco_trans_1_3 Glycosyl transferase family 1
Representative CDS sequence Show only first row Show all	>Potri.018G138204.1 pacid=42800784 polypeptide=Potri.018G138204.1.p locus=Potri.018G138204 ID=Potri.018G138204.1.v4.1 annot-version=v4.1 ATGGAGGGAATAGTATCGTCAAAGCAGCAGCAACCTTTGGTTTTTGCTTACTATGTTACTGGTCATGGATTTGGTCATGCCACTCGTGTTGTTGAGGTGG TTCGTCATTTAATTCTAGAGGGACATATTGTTCATGTGGTTACAGCTGCACCAGACTTTGTTTACACTTCTGCAATACAGTCGCCGAGACTGTTCCTTCG AAAGGAGCTGCTGGATTGTGGAGCTGTTCAATGTGATGCCTTGACAGTTGATCGTATTGCCTCCTTGGAAAAGTATTCTGAGACAGCAGTAATCCCTCGA GAGACTATCTTAGCAACAGAAGTGAAGTGGTTGCAGTCTATTAAAGCTGACCTAGTGGTTTCAGATGTTGTTCCTGTTGCCTGCCGAGCAGCTGCAGATG CCGGCATCCGTTCTGTTTGTTGCACCAACTTCAGTTGGGACTTCATCTACGCAGAATATGTGGTGGATGCTGGATCACAACATCGCTCGATTGTTCTGCA GATTGCCGAGGACTATTCTCACTGTGAATTTCTAATACGTCTACCAGGATATTGTCCAATGCCTGCTTTTCGTGATGTTCTTGATATACCCCTTGTTGTG AGGGGACTGCACAAATCCAGAGCAGAGGTCAGGAAGGAGCTCGGAGTTGAAGAGGATGTGAAGCTAGTAATTTTCAATTTTGGCGGACAGCCTGCTGGGT GGAAGTTACAGGAGGAGTTTCTACCTCCTGGTTGGAAGTGTGTGGTATGTGGGGGTTCTGACAAGGAAGAATATCCCCCGAATTTCATCAAGCTTCCGAA AGATGCTTATACGCCAGATGTGATAGCAGCTTCAGACTGCATGCTTGGGAAAATTGGATATGGCACATTTAGTGAAGCTATGGCATACAAGTTGCCGTTT GTGTTTGTACGAAGAGATTACTTTAATGAAGAGCTGTTTTTGAGAAACATGCTTGAGCATTATCATGGAGGTGTTGAGATGATTAGGAGAGATTTGCTGA CAGGATGCTGGCAACCCTACCTTGAGCGTGCCATTAGATTGAAACCATGCTATGATGGAGGTGTCAATGGCGGTGAGGTTGCTGCTCGCATACTTCAGGA TACAGCTCTTGGAAAAAATCATGCTTCTGATAAGCCTTGTGGAGCAAGAAGATTGCGAGATGCGATTGTGCTTGGATATCAACTACAAAGAGTTAACAAC AGAATTATAGGTATTCCAGATTGGTACAATCTTGAAGAAAACAAGCTTGTAGGTCGTTCATCAGAAGGCTCCCAATTCTTGAGAGAGGTAGAAGACTTTG AGATTCTTCACGGTGACCCTCAAGGTCTTCCCGATACAATGGCGTTCTTAAAGAGCTTGGCAGACATAGGTGCAGGACATGACTCAAAAAAGGATACCGA CGATGAAGTGCGGGAGGATTTGGCTGCTGCTGGATTGTTCAACTGGGAGGAGGAAATATTTGTAGCAAGAGCACCAGGGAGACTAGATGTCTTGGGTGGT ATTGCTGACTATTCAGGAAGTCTAGTTTTGCAGATGCCTATCAGAGAAGCTTGTCATGTTGCTGTACAAAAGAATCATCCAAGTAAACAGAAGCTGTGGA AACATGCACAGGCTAGACATCATGCTGATCACGAGAAACTTGCACCCATTCTAGAAATTGTGTCATTGGGCTCAGAATTGAATAATCGTGGACCAACATT TGACATGGATCTATCTGATTTTAAAGATGATGAGAAGCCAATATCTTATGAGGCAGCAAGGAAGTATTTTGCCAAAGATCCATCTCAAAAGTGGGCAGCA TATGTTGCTGGGACAATTGTGGTACTAATGACAGAGTTGGGTGTTTGTTTTGAGAACAGTATCAGCATACTGGTTTCTTCAGGAGTCCCAGAAGGCAAAG GCGTTTCTTCATCTGCAGCATTGGAGGTTTGCCACCATGTCTGCTATTGCTGCTGCTCATGGTTTAAACATTCCCCCCGCGAGATCTTGCTTTGCTTGCC AAAAGGCAAGTGGAGAATCATGTTGTTGGAGCCCCGTGTGGGGGTGATGGATCAAATGACCTCTGCGTGTGGGGGAAGCAAACAAACTTCTAGCGATGGT ATGCCAGCCTGCTGA
AA sequence Show only first row Show all	>Potri.018G138204.1 pacid=42800784 polypeptide=Potri.018G138204.1.p locus=Potri.018G138204 ID=Potri.018G138204.1.v4.1 annot-version=v4.1 MEGIVSSKQQQPLVFAYYVTGHGFGHATRVVEVVRHLILEGHIVHVVTAAPDFVYTSAIQSPRLFLRKELLDCGAVQCDALTVDRIASLEKYSETAVIPR ETILATEVKWLQSIKADLVVSDVVPVACRAAADAGIRSVCCTNFSWDFIYAEYVVDAGSQHRSIVLQIAEDYSHCEFLIRLPGYCPMPAFRDVLDIPLVV RGLHKSRAEVRKELGVEEDVKLVIFNFGGQPAGWKLQEEFLPPGWKCVVCGGSDKEEYPPNFIKLPKDAYTPDVIAASDCMLGKIGYGTFSEAMAYKLPF VFVRRDYFNEELFLRNMLEHYHGGVEMIRRDLLTGCWQPYLERAIRLKPCYDGGVNGGEVAARILQDTALGKNHASDKPCGARRLRDAIVLGYQLQRVNN RIIGIPDWYNLEENKLVGRSSEGSQFLREVEDFEILHGDPQGLPDTMAFLKSLADIGAGHDSKKDTDDEVREDLAAAGLFNWEEEIFVARAPGRLDVLGG IADYSGSLVLQMPIREACHVAVQKNHPSKQKLWKHAQARHHADHEKLAPILEIVSLGSELNNRGPTFDMDLSDFKDDEKPISYEAARKYFAKDPSQKWAA YVAGTIVVLMTELGVCFENSISILVSSGVPEGKGVSSSAALEVCHHVCYCCCSWFKHSPREILLCLPKGKWRIMLLEPRVGVMDQMTSACGGSKQTSSDG MPAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Potri.018G138204 [exp]	0	1
AT1G30890			Integral membrane HRF1 family ...		Potri.001G327700 [exp]	5.00	0.9994
					Potri.003G010499 [exp]	17.23	0.9994
					Potri.006G260948 [exp]	18.33	0.9993
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.001G335900 [exp]	18.73	0.9992
AT2G13810		EDTS5, ALD1	eds two suppressor 5, AGD2-lik...		Potri.002G091500 [exp]	20.12	0.9991
AT2G15220			Plant basic secretory protein ...		Potri.009G094500 [exp]	20.49	0.9992
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.003G213700 [exp]	21.81	0.9991
					Potri.003G010532 [exp]	21.90	0.9991
					Potri.003G010433 [exp]	22.80	0.9990
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Potri.003G195900 [exp]	22.84	0.9991	NQR.1

Compare expression of checked genes

Potri.018G138204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.