Plant FIBer expression Database

Potri.018G138206 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G145600
[exp]
1148 / 0 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029579
[exp]
674 / 0 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0061 PLP_aminotran PF00155 Aminotran_1_2 Aminotransferase class I and II
CL0061 PF03711 OKR_DC_1_C Orn/Lys/Arg decarboxylase, C-terminal domain
Representative CDS sequence
>Potri.018G138206.1 pacid=42800763 polypeptide=Potri.018G138206.1.p locus=Potri.018G138206 ID=Potri.018G138206.1.v4.1 annot-version=v4.1
ATGTCTTGCTCCACTCTTCTGGACCAAAGTCTTCAGTTGGGTTTTGCCAAGAAATGGACTTCTGTATCTTTGAGACCAAGAACAAGCACTTGTTGCACTT
GTCAGGAAAGAAGCACCTTGGAGCCAAAAAAGAAAGGAGATAGAGAAAGCAGAGGAGAGAAAAACAGGTCAGTCACCGAGGATAAATCCCTTATTTCCAG
ATCTCGTATAAGTCAGCAAGACAGCCTTCCTCCATTGGTTGGTGCTTTGAAAGCTTCAGCTGAAAAAAATGCAGCCAGCTTTCACTTCCCTGGGCATAAT
AGAGGGCGTGCTGCACCGTCTTCATTAACACAACTTATTGGGTTGAGACCATTTATTCATGATTTACCTGAGCTTCCAGAGCTTGACAACCTCTTTTCAC
CAGAGGGGCCCATTTTAGAGGCACAAATGCAAGCTGCCAAACTATTTGGATCTTCAGAAACATGGTTTCTTGTTGGAGGTACCACTTGTGGAATCCAAGC
TGCAATAATGGCAACTTGTTCACCTGGAGAACATATTGTTCTCCCTCGCAATTCACATATATCAGCCATATCTGCTATGGTATTATCTGGAGCAATACCG
AAGTACATAATGCCTGGGTATGATTGTAAATGGGATATTGCTGGTGGTGTCACTCCCTCACAGGTGGGGAAAGCTATCAAAGAGTTGGAGATGGATGGTA
AAAAACCAGCTGCAGTTTTTATCACATCACCTACTTATCATGGTATATGCAGCAACTTGAGTGAGATTTCCCAACTTTGTCATGCTTATGGAATTCCTGT
GATTGTCGACGAGGCTCATGGAGCACACCTAGGATTCCATCCCCAGATGCCTCATTCAGCTCTTAAGCAGGGTGCTGATTTGGTGGTACAATCCACTCAC
AAAGTTCTGTGTTCCCTTACACAGTCATCAATGTTGCACATGTCTGGGAATATTGTAGACAGAGATAGAATCTGTCGGTGCCTTCAAACCCTTCAAAGCA
CAAGCCCCAGTTATCTGCTTTTAGCATCATTAGATGCTGCTAGAGCTCAACTTGCTGAAAACCCAGGAACAGTTTTCAACAAAGCTTTGGAGTTGGCAAT
TGAAGCAAGCACTCTCATTAAAAAGATTCCTGGTATTAGCGTGCTTGACTTGGCGAGCTTCAATGAATTTCCTGCCATTGATCCCTTGCGCCTCACTCTT
GGTTTTTGGTCACTTGGTTTATCTGGCTATGAAGCAGATGATATTTTAGATAGGGACCATGGAGTCATCTCTGAGCTTGTTGGGACCCAATCTATTACAT
TTGCAATAAACCTTGGAACTTGCAGGGAACATAATCAAAGGTTAGTATCAGGTTTAAAAAAACTACCAACATCTTCCTTACATTCCAAAACCACGGAAAA
GAGGGTGGAGAGCAGAGAGCATGCACCCTTCAATGATATTTGTATCAGTTTGAATCCAAGAGATGCCTTTTTTGCAAATAAAAGGAGTGTGAGTGTCAGA
GAGAGCCTTGGCAAGGTCTGTGGTGAGCTTATATGTCCATACCCACCAGGGATCCCTGTAATGATTCCTGGTGAGATTATTACAGAAAGGGCTTTGAATT
ATCTGCTGGATGTTAGAAGGAAAGGTGCTGTTGTTACTGGAGCTTCCGATTCTCATCTCTCTTCCATAGTTATCTGTGATGTGTGA
AA sequence
>Potri.018G138206.1 pacid=42800763 polypeptide=Potri.018G138206.1.p locus=Potri.018G138206 ID=Potri.018G138206.1.v4.1 annot-version=v4.1
MSCSTLLDQSLQLGFAKKWTSVSLRPRTSTCCTCQERSTLEPKKKGDRESRGEKNRSVTEDKSLISRSRISQQDSLPPLVGALKASAEKNAASFHFPGHN
RGRAAPSSLTQLIGLRPFIHDLPELPELDNLFSPEGPILEAQMQAAKLFGSSETWFLVGGTTCGIQAAIMATCSPGEHIVLPRNSHISAISAMVLSGAIP
KYIMPGYDCKWDIAGGVTPSQVGKAIKELEMDGKKPAAVFITSPTYHGICSNLSEISQLCHAYGIPVIVDEAHGAHLGFHPQMPHSALKQGADLVVQSTH
KVLCSLTQSSMLHMSGNIVDRDRICRCLQTLQSTSPSYLLLASLDAARAQLAENPGTVFNKALELAIEASTLIKKIPGISVLDLASFNEFPAIDPLRLTL
GFWSLGLSGYEADDILDRDHGVISELVGTQSITFAINLGTCREHNQRLVSGLKKLPTSSLHSKTTEKRVESREHAPFNDICISLNPRDAFFANKRSVSVR
ESLGKVCGELICPYPPGIPVMIPGEIITERALNYLLDVRRKGAVVTGASDSHLSSIVICDV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G138206
[exp]
0 1
Potri.018G145600
[exp]
1.00 0.9632
AT4G31040 CemA-like proton extrusion pro... Potri.006G080100
[exp]
1.41 0.9474
AT2G47940 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP pr... Potri.014G135200
[exp]
3.46 0.9105 Pt-DEGP2.2
AT1G06950 ATTIC110, TIC11... ARABIDOPSIS THALIANA TRANSLOCO... Potri.013G154300
[exp]
3.87 0.9090
AT1G03670 ankyrin repeat family protein ... Potri.018G078450
[exp]
5.19 0.9124
Potri.015G043301
[exp]
6.16 0.8780
AT4G34020 AtDJ1C DJ-1 homolog C, Class I glutam... Potri.009G100900
[exp]
6.92 0.9085
AT1G56180 unknown protein Potri.010G171400
[exp]
7.14 0.8857
AT1G17720 ATBBETA, ATB BE... Protein phosphatase 2A, regula... Potri.015G079300
[exp]
7.21 0.8739
AT5G16715 EMB2247 embryo defective 2247, ATP bin... Potri.017G124500
[exp]
7.21 0.8931

Potri.018G138206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.