Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17220 343 / 2e-115 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT4G35600 320 / 1e-106 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT1G61590 312 / 3e-103 Protein kinase superfamily protein (.1) AT2G28930 310 / 1e-102 APK1B protein kinase 1B (.1.2.3) AT1G76360 310 / 6e-102 Protein kinase superfamily protein (.1) AT5G01020 305 / 1e-100 Protein kinase superfamily protein (.1) AT5G02290 303 / 2e-100 NAK Protein kinase superfamily protein (.1.2) AT5G15080 305 / 1e-99 Protein kinase superfamily protein (.1) AT3G28690 296 / 6e-98 Protein kinase superfamily protein (.1.2.3) AT2G07180 298 / 1e-97 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G135300 [exp] 588 / 0 AT2G17220 358 / 1e-121 kinase 3, Protein kinase superfamily protein (.1.2) Potri.006G072100 [exp] 564 / 0 AT2G17220 343 / 6e-115 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G134100 [exp] 473 / 2e-166 AT2G17220 386 / 6e-132 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G133801 [exp] 470 / 3e-165 AT2G17220 372 / 1e-126 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G138900 [exp] 391 / 1e-134 AT2G17220 391 / 2e-134 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G139000 [exp] 378 / 4e-129 AT2G17220 362 / 8e-123 kinase 3, Protein kinase superfamily protein (.1.2) Potri.006G072200 [exp] 370 / 3e-126 AT2G17220 391 / 2e-134 kinase 3, Protein kinase superfamily protein (.1.2) Potri.009G167400 [exp] 366 / 2e-124 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.004G206100 [exp] 359 / 1e-121 AT2G17220 539 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023000 [exp] 346 / 2e-116 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10001392 [exp] 342 / 6e-115 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10026546 [exp] 352 / 1e-111 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10016020 [exp] 330 / 2e-110 AT1G76360 493 / 2e-173 Protein kinase superfamily protein (.1) Lus10012256 [exp] 329 / 6e-110 AT1G76360 499 / 1e-175 Protein kinase superfamily protein (.1) Lus10024512 [exp] 327 / 5e-109 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10013832 [exp] 352 / 6e-109 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008015 [exp] 320 / 3e-106 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 314 / 3e-104 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 309 / 8e-103 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.018G138401.2 pacid=42801600 polypeptide=Potri.018G138401.2.p locus=Potri.018G138401 ID=Potri.018G138401.2.v4.1 annot-version=v4.1 ATGGGGATTCTCTGTTGTTGCAGTTCTGGTCAATCAAATCCAGCCCTAGATACTGGCCCTGCTCCTGTTGTACTAGCCCCAGTATCAATCCCTGACCCAG ACATAGCTCCTACCTCTTCTGGACATCTCTTTGAAGGTGAAATATCCTTTCTGGTTAGCGATGTCACCGTCAACAACTGGTTCTCTATGGTAACCATGAC TTTTACAAGAAGGAGGTCCGCTGCTTTGGGAAAAAATGCTCCTGAGGACATTGAACTGCCAGCCCTTCCAGATGAGACACCAGAGTCAAAGTTGAGAGTT TTCACGTTTGAACAATTGAAGACAGCAGCCTTCGATTTTAGAAGTGATATGTTACTGGGAAAAGGAGGTTTCGGCAGTGTCTACAAGGGTTTGCTCAAAG AAAAGTTATTTAAAGGATATACCAGGAAACGGCGGATTGCTGTCAAGAAATTGGATTCTGACAGCAAGCAAGGTCTTCGACAGTGGCAGACAGAGGTCGG TTTCTTAGCAAGGGTTTCTCATCCAAACATTGTAAAGCTGCTAGGATACTGTCAGGAAAATGCAAATAAAGAGTTGCTTATTGTCTATCAATTCATGGAG AAAGGCAGTTTAAATTACCATTTGTTTGGAAAGCGCTCTGATCGGCTTCTTCCTTGGGAAACAAGGTTAAAGATTATAACAGGAATGGCTCGAGCCCTAT CTTATTTGCATACAATGGAAAGGCCAATAATTTTCAGAGATTTCAAGACCTCGAATATATTGCTTGATGAGACCTATACTCCGAAACTATCAGATTTTGG CTTGGCAAAATGGGGCCCCAATGATGGTAGTTCACATGTAACAGGAAATGTTATGGGCACATATGGCTATGTTGGTCCTGAATATAAGAATGGAGGGAAG TTGTATGTAAAGAGTGATGTGTACAGTTATGGAGTAGTATTGATGGAGATGCTGACAGGCTTACGGGCAATTGACAAAAATCGGCCGCCAGGGCAACAGG ACCTGCGGGAATGGGCTTTACCGTTTCTTTCAGATAGATCAAGGTTGAGACATATAATGGATCCCAGACTGCAGGGTAAATATGGGACCAAACAAGCTTC AGAAATAGCTGTACTTGCTGTTAGATGTGTTAAAGCAAATCCCACATTCCGGCCATCTATGAAAGAAGTTGCTGAGACATTGGATAGATTGAAGCTCCAG AAGTAG
AA sequence Show only first row Show all	>Potri.018G138401.2 pacid=42801600 polypeptide=Potri.018G138401.2.p locus=Potri.018G138401 ID=Potri.018G138401.2.v4.1 annot-version=v4.1 MGILCCCSSGQSNPALDTGPAPVVLAPVSIPDPDIAPTSSGHLFEGEISFLVSDVTVNNWFSMVTMTFTRRRSAALGKNAPEDIELPALPDETPESKLRV FTFEQLKTAAFDFRSDMLLGKGGFGSVYKGLLKEKLFKGYTRKRRIAVKKLDSDSKQGLRQWQTEVGFLARVSHPNIVKLLGYCQENANKELLIVYQFME KGSLNYHLFGKRSDRLLPWETRLKIITGMARALSYLHTMERPIIFRDFKTSNILLDETYTPKLSDFGLAKWGPNDGSSHVTGNVMGTYGYVGPEYKNGGK LYVKSDVYSYGVVLMEMLTGLRAIDKNRPPGQQDLREWALPFLSDRSRLRHIMDPRLQGKYGTKQASEIAVLAVRCVKANPTFRPSMKEVAETLDRLKLQ K

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G138401 [exp]	0	1
AT2G23770			protein kinase family protein ...		Potri.005G128300 [exp]	2.00	0.9806
AT1G49000			unknown protein		Potri.010G130600 [exp]	3.87	0.9776
AT5G37990			S-adenosyl-L-methionine-depend...		Potri.017G121800 [exp]	3.87	0.9788
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.003G122500 [exp]	5.29	0.9779	CYP87.2
AT1G52540			Protein kinase superfamily pro...		Potri.012G132200 [exp]	6.92	0.9707
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.001G280000 [exp]	6.92	0.9731
AT5G37970			S-adenosyl-L-methionine-depend...		Potri.017G122000 [exp]	7.00	0.9722
AT1G03055			unknown protein		Potri.002G046500 [exp]	10.39	0.9669
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.017G079500 [exp]	13.00	0.9667	Pt-WRKY72.1
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Potri.010G067700 [exp]	13.67	0.9674

Compare expression of checked genes

Potri.018G138401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.