Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17220 377 / 3e-128 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT2G28930 340 / 7e-114 APK1B protein kinase 1B (.1.2.3) AT4G35600 332 / 1e-110 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT1G76360 330 / 5e-109 Protein kinase superfamily protein (.1) AT1G07570 327 / 2e-108 APK1A Protein kinase superfamily protein (.1.2.3) AT2G02800 321 / 5e-106 Kin2, APK2B protein kinase 2B (.1.2) AT5G02290 318 / 2e-105 NAK Protein kinase superfamily protein (.1.2) AT1G26970 309 / 1e-101 Protein kinase superfamily protein (.1) AT1G14370 308 / 4e-101 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT3G55450 303 / 1e-99 PBL1 PBS1-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G138900 [exp] 434 / 8e-151 AT2G17220 391 / 2e-134 kinase 3, Protein kinase superfamily protein (.1.2) Potri.006G072200 [exp] 424 / 5e-147 AT2G17220 391 / 2e-134 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G134100 [exp] 407 / 1e-139 AT2G17220 386 / 6e-132 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G139000 [exp] 403 / 2e-138 AT2G17220 362 / 8e-123 kinase 3, Protein kinase superfamily protein (.1.2) Potri.009G167400 [exp] 403 / 3e-138 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.004G206100 [exp] 399 / 1e-136 AT2G17220 539 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G133801 [exp] 375 / 2e-127 AT2G17220 372 / 1e-126 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G135300 [exp] 371 / 3e-126 AT2G17220 358 / 1e-121 kinase 3, Protein kinase superfamily protein (.1.2) Potri.005G100900 [exp] 372 / 5e-126 AT2G17220 462 / 6e-162 kinase 3, Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001392 [exp] 384 / 2e-130 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10023000 [exp] 381 / 1e-129 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10026546 [exp] 377 / 2e-120 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10008015 [exp] 355 / 4e-119 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10024512 [exp] 353 / 1e-118 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10013832 [exp] 372 / 2e-115 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010835 [exp] 342 / 1e-114 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016020 [exp] 342 / 2e-114 AT1G76360 493 / 2e-173 Protein kinase superfamily protein (.1) Lus10024391 [exp] 342 / 2e-114 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012256 [exp] 340 / 1e-113 AT1G76360 499 / 1e-175 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.018G138700.2 pacid=42801384 polypeptide=Potri.018G138700.2.p locus=Potri.018G138700 ID=Potri.018G138700.2.v4.1 annot-version=v4.1 ATGGGGATTTGCTGGAGCTCTTCACCTGATCAGAAGCCAAACTCACTTCCCATAGTACCAAGTAACATAGATAATCTCAGTGCAGGTGATACCTTTTCTG TTGGTGATAACAGCTGGCTGAGTGTTGGAAGCAGCAACATTACAGCATGGGTGTCTCAAGTAAGTGGGAGTTTTACTCGTATTTGGGGCAAGAATAATGG AACTCATGAGGATAGCCGATATTTAGATGCCGGTAGTGATGAGGATTTTGAAAATGGTGGAATCAGTAACATTGCCGTGGCAAACTTGAAAGTTTTCTCA TATGCACAATTGATAGCTGCAACTAATAATTTTGGAAGAGATATGGTGGTGGGCAGGGGAGGTTTTGGCAAAGTATACAAGGGTTGGCAAAAGGAGATGG TGCCATCAATGGGGATAAAGAAGTCAGCCATTGCTGTCAAGAAGTTGGGTACTGCAAGTAGGCAAGGATTTCAGCAGTGGCAGGCAGAGGTGAATGTTTT GGGAAGACTTTCTCATCCTAATCTTGTAAAGCTGTTGGGGTATTGCTACGAGAATAAACAATTTCTCCTTGTCTATGAGTACCTTCCCAATGGAAGCCTC AATTACCATTTGTTTGGAAAGGGCTCAGTCCAGCCACTTACTTGGGACATAAGATTTAAGATTGTTATAGGAGTTGCTCAAGGCCTGACTTACATGCACA GTCCTGAAGTATCGGTAAATCATAGAGATTTGAAGTCCTCAAACATACTTCTTGATGAGTTCTATAATGCAAGGATAGCAGACTTTGGCTTGGCGGCGTT GGTTCCCTCGGCTGATGAATCACAGGCTGAAACTCATTTAATGGGCACATATGGTTATGCTGCTCCTGAGGTGTATGCCACAGGACATCGTTATGCGAAG AGTGATGTGTACAGTTTTGGAGTTGTTTTGGTCGAGATGCTAACAGGCTTGCGAGCAATCGACAGGAGACGTCCGAATGAGCAACAATTTCTGGTGTCCT GGGTAATACCATTTCTGTCAAGCAAAAGAAAGTTGAAAAGCATAATGGACACACGGTTGAAAGGGAAATATCCTCTCAAAGAAGCATCACTAGTTGCTCG GCTTGCTATCAGATGTCTTAAGGTGGAGCCCAAAATCCGGCCATCCATGAAAGAAATTGCTGAGACATTGGAACACGTTGAAGTGCGCAAATACAAGACA CAAACAATCCACTTTCAACGAATTAACTGGGGACTACAACGCGGTTTGTGGGTCATGATTATGGGATATCTCCTGGACTTTTCAAGGAGAAGACTTTCTG GAAGTGCTTGCAGAAAACTATTGTGGAGTTGCTAG
AA sequence Show only first row Show all	>Potri.018G138700.2 pacid=42801384 polypeptide=Potri.018G138700.2.p locus=Potri.018G138700 ID=Potri.018G138700.2.v4.1 annot-version=v4.1 MGICWSSSPDQKPNSLPIVPSNIDNLSAGDTFSVGDNSWLSVGSSNITAWVSQVSGSFTRIWGKNNGTHEDSRYLDAGSDEDFENGGISNIAVANLKVFS YAQLIAATNNFGRDMVVGRGGFGKVYKGWQKEMVPSMGIKKSAIAVKKLGTASRQGFQQWQAEVNVLGRLSHPNLVKLLGYCYENKQFLLVYEYLPNGSL NYHLFGKGSVQPLTWDIRFKIVIGVAQGLTYMHSPEVSVNHRDLKSSNILLDEFYNARIADFGLAALVPSADESQAETHLMGTYGYAAPEVYATGHRYAK SDVYSFGVVLVEMLTGLRAIDRRRPNEQQFLVSWVIPFLSSKRKLKSIMDTRLKGKYPLKEASLVARLAIRCLKVEPKIRPSMKEIAETLEHVEVRKYKT QTIHFQRINWGLQRGLWVMIMGYLLDFSRRRLSGSACRKLLWSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G138700 [exp]	0	1
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.005G014900 [exp]	1.00	0.8092
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Potri.007G020100 [exp]	1.41	0.7989
					Potri.008G030801 [exp]	2.82	0.7630
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045800 [exp]	4.47	0.7231
AT1G01710			Acyl-CoA thioesterase family p...		Potri.014G083300 [exp]	7.34	0.7748
AT3G63380			ATPase E1-E2 type family prote...		Potri.016G009500 [exp]	26.26	0.7211
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Potri.006G125400 [exp]	30.88	0.6732	Pt-TKI1.2
AT1G14130			2-oxoglutarate (2OG) and Fe(II...		Potri.001G455400 [exp]	34.08	0.6340	Pt-ARRO.2,2OGox14
AT1G20100			unknown protein		Potri.002G019200 [exp]	38.60	0.7090
AT1G70740			Protein kinase superfamily pro...		Potri.010G109700 [exp]	51.76	0.6426

Compare expression of checked genes

Potri.018G138700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.