Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17220 391 / 2e-134 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT5G02290 345 / 1e-116 NAK Protein kinase superfamily protein (.1.2) AT4G35600 344 / 5e-116 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT2G28930 343 / 1e-115 APK1B protein kinase 1B (.1.2.3) AT1G07570 343 / 2e-115 APK1A Protein kinase superfamily protein (.1.2.3) AT1G76360 337 / 2e-112 Protein kinase superfamily protein (.1) AT3G55450 328 / 7e-110 PBL1 PBS1-like 1 (.1.2) AT2G02800 325 / 2e-108 Kin2, APK2B protein kinase 2B (.1.2) AT5G01020 324 / 3e-108 Protein kinase superfamily protein (.1) AT3G28690 323 / 2e-107 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G139000 [exp] 733 / 0 AT2G17220 362 / 8e-123 kinase 3, Protein kinase superfamily protein (.1.2) Potri.006G072200 [exp] 706 / 0 AT2G17220 391 / 2e-134 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G138700 [exp] 435 / 3e-151 AT2G17220 377 / 4e-128 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G134100 [exp] 432 / 3e-150 AT2G17220 386 / 6e-132 kinase 3, Protein kinase superfamily protein (.1.2) Potri.009G167400 [exp] 431 / 7e-150 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G133801 [exp] 427 / 1e-148 AT2G17220 372 / 1e-126 kinase 3, Protein kinase superfamily protein (.1.2) Potri.004G206100 [exp] 421 / 3e-146 AT2G17220 539 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G135300 [exp] 403 / 2e-139 AT2G17220 358 / 1e-121 kinase 3, Protein kinase superfamily protein (.1.2) Potri.006G072100 [exp] 404 / 4e-139 AT2G17220 343 / 6e-115 kinase 3, Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001392 [exp] 417 / 3e-144 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10023000 [exp] 412 / 1e-142 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10026546 [exp] 403 / 3e-131 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10024512 [exp] 372 / 2e-126 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10013832 [exp] 400 / 6e-126 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016020 [exp] 368 / 2e-125 AT1G76360 493 / 2e-173 Protein kinase superfamily protein (.1) Lus10012256 [exp] 368 / 4e-125 AT1G76360 499 / 1e-175 Protein kinase superfamily protein (.1) Lus10008015 [exp] 363 / 3e-123 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 362 / 3e-123 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 361 / 6e-123 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.018G138900.1 pacid=42801354 polypeptide=Potri.018G138900.1.p locus=Potri.018G138900 ID=Potri.018G138900.1.v4.1 annot-version=v4.1 ATGGGGATTTGCTGTAGCTGTTCAGCTCACAAGCCAGCTACAACACAAGATCAAGACCCAACACCAAGCACCGCCGACCATGTCAGTGCAGGTAGCGATG ACTTTGGAAACGGCTGGTTCTCAATAGCAAGCACTAGCATTACAACATGGATGTCTCATCCAAGTAGCAGCTTCACAACTATTTGGGGTAAAAATGTCCC TGAGAGCAGCCAATTCTCAGATGCAACTGGAAGTGGTGATGGGACTTTAGCAAACGGGCAAAATGCTACCAACTCAAGCGTGACAGTATTCACATTGGCG CAACTGAGGTCTGCAACATATAATTTTAGATCTGATATGGTGTTGGGAAAAGGAGGTTTTGGCGATGTCTATAAGGGTTGGCTTAAGGAGAAGTTGCCTC CAAGGGGTATAAAGAAGACGGCCGTTGCTATCAAGAAATTGGATTCTTTCAGCATGCAAGGATTAAAAGAGTGGAAGGCTGAGGTGTATTTCTTAGGAAC ACATTCTCACCCAAACCTAGTAAAGCTATTGGGATATTGTTCGGAAAGTAGAGAGCGCATCCTTGTCTATGAATTCATGAAAAAGGGAAGCTTAAATTAC CATCTCTTTGGAAAGCGCTCAGTTCCACCACTTTCATGGGACATTAGGCTCAAGATTGCTATAGATACTGCTCGTGGTCTGGCTTACTTGCACACATTGG AAAAACCAATAATTTACCGAGATTTCAAGTCCTCAAATATACTGCTGGATGAGTTCTATAACGCGAAGCTATCAGACTTTGGCTTGTCATTTTGGGGTCC CTTGATTGATTCACATGTCAGTACAAGAATTGCAGGCACGATGGGTTACATTGATCCGGAATATCTTGCAACAGGACATTTGCATGTGAAGAGTGATGTA TACGGGTTTGGAGTTGTTGTTGTTGAGATGCTAACTGGTTTACGTGCAATCGACATGAAACGTCCAAGTGGGAAACAGATACTTGTTGACTGGGTTAAAC CTTATCTGACAAACAGAAGAAAGTTGAAAAAAATAATGGACTCCCGGTTGGAAGGTAAATATCCTCCTAAAGAGGCTTCCCAAATAGCTCACCTTGCTAT TAAATGTCTTCAACAGGAGTCCCGCTTCCGGCCATCAATGACAGAAATTGCTGAGACACTTGAACAGATTGATGCCATCCATATGAGATTGGGATAG
AA sequence Show only first row Show all	>Potri.018G138900.1 pacid=42801354 polypeptide=Potri.018G138900.1.p locus=Potri.018G138900 ID=Potri.018G138900.1.v4.1 annot-version=v4.1 MGICCSCSAHKPATTQDQDPTPSTADHVSAGSDDFGNGWFSIASTSITTWMSHPSSSFTTIWGKNVPESSQFSDATGSGDGTLANGQNATNSSVTVFTLA QLRSATYNFRSDMVLGKGGFGDVYKGWLKEKLPPRGIKKTAVAIKKLDSFSMQGLKEWKAEVYFLGTHSHPNLVKLLGYCSESRERILVYEFMKKGSLNY HLFGKRSVPPLSWDIRLKIAIDTARGLAYLHTLEKPIIYRDFKSSNILLDEFYNAKLSDFGLSFWGPLIDSHVSTRIAGTMGYIDPEYLATGHLHVKSDV YGFGVVVVEMLTGLRAIDMKRPSGKQILVDWVKPYLTNRRKLKKIMDSRLEGKYPPKEASQIAHLAIKCLQQESRFRPSMTEIAETLEQIDAIHMRLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G138900 [exp]	0	1
AT5G32470			Haem oxygenase-like, multi-hel...		Potri.013G049300 [exp]	7.48	0.8267
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Potri.011G090900 [exp]	16.55	0.8626
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Potri.012G107900 [exp]	20.09	0.8403
AT4G20300			Protein of unknown function (D...		Potri.003G157500 [exp]	23.40	0.7841
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Potri.006G237500 [exp]	26.22	0.8262	Pt-HB1.6
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Potri.009G113700 [exp]	28.00	0.8329	Pt-ALPHA.12
AT1G21170		SEC5B	Exocyst complex component SEC5...		Potri.002G068900 [exp]	33.76	0.8378	Pt-SEC5.2
AT1G52155			unknown protein		Potri.001G187300 [exp]	36.00	0.8275
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.006G109200 [exp]	42.70	0.8244
AT5G46910			Transcription factor jumonji (...		Potri.001G137700 [exp]	42.73	0.8282

Compare expression of checked genes

Potri.018G138900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.