Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17220 363 / 6e-123 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT5G02290 323 / 9e-108 NAK Protein kinase superfamily protein (.1.2) AT2G28930 322 / 5e-107 APK1B protein kinase 1B (.1.2.3) AT4G35600 322 / 1e-106 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT1G07570 317 / 7e-105 APK1A Protein kinase superfamily protein (.1.2.3) AT2G02800 310 / 4e-102 Kin2, APK2B protein kinase 2B (.1.2) AT3G55450 308 / 9e-102 PBL1 PBS1-like 1 (.1.2) AT1G76360 307 / 2e-100 Protein kinase superfamily protein (.1) AT1G14370 306 / 2e-100 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT2G39660 302 / 2e-99 BIK1 botrytis-induced kinase1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G138900 [exp] 733 / 0 AT2G17220 391 / 2e-134 kinase 3, Protein kinase superfamily protein (.1.2) Potri.006G072200 [exp] 663 / 0 AT2G17220 391 / 2e-134 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G134100 [exp] 411 / 9e-142 AT2G17220 386 / 6e-132 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G138700 [exp] 405 / 5e-139 AT2G17220 377 / 4e-128 kinase 3, Protein kinase superfamily protein (.1.2) Potri.009G167400 [exp] 398 / 2e-136 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G133801 [exp] 396 / 7e-136 AT2G17220 372 / 1e-126 kinase 3, Protein kinase superfamily protein (.1.2) Potri.006G072100 [exp] 389 / 7e-133 AT2G17220 343 / 6e-115 kinase 3, Protein kinase superfamily protein (.1.2) Potri.004G206100 [exp] 382 / 3e-130 AT2G17220 539 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G135300 [exp] 379 / 2e-129 AT2G17220 358 / 1e-121 kinase 3, Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001392 [exp] 382 / 5e-130 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10023000 [exp] 380 / 2e-129 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10026546 [exp] 376 / 1e-120 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10024512 [exp] 352 / 4e-118 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10013832 [exp] 373 / 7e-116 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008015 [exp] 345 / 2e-115 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10016020 [exp] 340 / 5e-114 AT1G76360 493 / 2e-173 Protein kinase superfamily protein (.1) Lus10012256 [exp] 339 / 2e-113 AT1G76360 499 / 1e-175 Protein kinase superfamily protein (.1) Lus10010835 [exp] 336 / 2e-112 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 335 / 3e-112 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.018G139000.1 pacid=42800727 polypeptide=Potri.018G139000.1.p locus=Potri.018G139000 ID=Potri.018G139000.1.v4.1 annot-version=v4.1 ATGGGGATTTGCTGTAGCTGTTCAGCTCAGAAGCCAGCAACAACCCAAGATCAAGACCCAACACCAAGCACCGCCGACCATGTCAGTGCAGGTAGCGATG ACTTTGGAAACAGCTGGTTCTCCAGAGTAAGCACCAGCATTACATCATGGATGTCTCAACCAAGTAGCAGCTTCACATTTATCTGGGATAAAAATGTCCC TGAGAGCAGCCAATTCTCAGATGCAACTGGAAGTGGTGATGGGACTTTAGCAAATGGGCAAAATGCTACCAACTCAAGCGCAAGAGTATTCACATTGGCG CAATTGAGGGCTGCAACATATAATTTTAGATCCGATATGTTGCTGGGAAAAGGAGGTTTTGGTGACGTCTATAAGGGTTGGCTTAAGGAGAAGTTGCCTC CAAGTGGTATAAAGAAGACGGTCGTTGCTGTCAAGAAATTAGATACCTTCAGCATGCAAGGATTAAATGAGTGGAAGGCCGAGGTGTATTTCTCCGAAAA ACATTCTCACCCGAACCTGGTAAAACTATTGGGATATTGTTCGGAATGTGGAGACCGCATCCTTGTCTATGAGTTCATGAAAAAGGGAAGCTTAAATTAC CATCTCTTTGGAAAGCACTCATTTCCACCACTTTCATGGGACATTAGGCTCAAGATTGCTGTAGATACTGCTCGTGGTCTGGCTTACTTGCACACATTGG AAGAGCCAATAATTTACCGAGATTTCAAGTCATCGAATATGCTACTTGACGAGTTCTATAACCCGAAGCTACCAGACTTTGGCTTGTCATTTTGGGGTCC CTTGATTGATTCACATGTCAGTACAGGAATCGCAGGCATGATAGGTTACATTGATCCGGAATATCTTGCAACAGGACATTTGAATGTGAAGAGTGATGTG TACGGGTTTGGAGTTGTTATGGTTGAGATGCTAACTGGTTTACGTGCAATCGACATGAAACGTCCAAGTGGGAAACAGATACTTGTTGACTGGGCTAAAC CTTATCTGACAAACAGAAGCAAGTTGAAAAATATAATGGACTCCTGGTTGAAAGGGAAATTTCCTCCCAAAGAGGCTTACCAAATAGCTCACCTTGCTAT TAAATGTCTTCAACACGATCCCCGCTTCCGGCCATCAATGACAGAAATTGCTGAGACAGTCGAACAGATTGATGCCATCCATATGAGATTGGAGCGGCCA GTTCCACCACTTCCGTGGGATACGAGGATGAAGATTGTGAAGGATACTGCTACAGGCCTGGCTTACTTGCACACATTGGAATAG
AA sequence Show only first row Show all	>Potri.018G139000.1 pacid=42800727 polypeptide=Potri.018G139000.1.p locus=Potri.018G139000 ID=Potri.018G139000.1.v4.1 annot-version=v4.1 MGICCSCSAQKPATTQDQDPTPSTADHVSAGSDDFGNSWFSRVSTSITSWMSQPSSSFTFIWDKNVPESSQFSDATGSGDGTLANGQNATNSSARVFTLA QLRAATYNFRSDMLLGKGGFGDVYKGWLKEKLPPSGIKKTVVAVKKLDTFSMQGLNEWKAEVYFSEKHSHPNLVKLLGYCSECGDRILVYEFMKKGSLNY HLFGKHSFPPLSWDIRLKIAVDTARGLAYLHTLEEPIIYRDFKSSNMLLDEFYNPKLPDFGLSFWGPLIDSHVSTGIAGMIGYIDPEYLATGHLNVKSDV YGFGVVMVEMLTGLRAIDMKRPSGKQILVDWAKPYLTNRSKLKNIMDSWLKGKFPPKEAYQIAHLAIKCLQHDPRFRPSMTEIAETVEQIDAIHMRLERP VPPLPWDTRMKIVKDTATGLAYLHTLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G139000 [exp]	0	1
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.004G115500 [exp]	33.76	0.8394
AT2G24370			Protein kinase protein with ad...		Potri.018G002400 [exp]	37.74	0.8394
					Potri.011G153350 [exp]	40.76	0.6938
					Potri.001G169351 [exp]	47.74	0.8394
					Potri.001G196900 [exp]	55.99	0.8394
AT3G28007		SWEET4, AtSWEET...	Nodulin MtN3 family protein (....		Potri.001G344300 [exp]	63.16	0.8394
					Potri.002G092751 [exp]	77.36	0.8394
					Potri.003G015466 [exp]	84.40	0.8394
					Potri.003G072050 [exp]	87.72	0.8394
AT1G30190			unknown protein		Potri.004G065300 [exp]	92.46	0.8394

Compare expression of checked genes

Potri.018G139000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.