Plant FIBer expression Database

Potri.018G139200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G072300
[exp]
119 / 1e-35 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.018G139200.1 pacid=42801022 polypeptide=Potri.018G139200.1.p locus=Potri.018G139200 ID=Potri.018G139200.1.v4.1 annot-version=v4.1
ATGGGTCTTGAGATTTCAGAAGAGTTCAGGCCAATTACGCCAATAAGAACAGTTTCAAGAACATGCAGTAATAGTACTACAAATAGTAGTATTGGAACAA
AATTCTGTGAAGCCAAGGAAGCTGATGCGAAGAAGATTCTCAATTTTGATGAAGATCAAGAGAGCAGTAATCCTAGCACACCAAAGTCACCAACTCATAT
TTTGAAGTCACCTTTGGTGTGCCCACCAGCTCCAAGGAAACCTAGGCCTCCAAAGAGGAAATTGAGCCCTCCTCCACAAGGGTTCTTTGAGATTCCAGTA
AACGATTCAGATTCGGTTCTTATGGTGCTCACAACATGTAATTCCAAGAAGATGAGAGCGACTTGA
AA sequence
>Potri.018G139200.1 pacid=42801022 polypeptide=Potri.018G139200.1.p locus=Potri.018G139200 ID=Potri.018G139200.1.v4.1 annot-version=v4.1
MGLEISEEFRPITPIRTVSRTCSNSTTNSSIGTKFCEAKEADAKKILNFDEDQESSNPSTPKSPTHILKSPLVCPPAPRKPRPPKRKLSPPPQGFFEIPV
NDSDSVLMVLTTCNSKKMRAT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G139200
[exp]
0 1
Potri.002G223100
[exp]
1.73 0.8997
AT5G04310 Pectin lyase-like superfamily ... Potri.008G032700
[exp]
3.16 0.8873
AT5G26330 Cupredoxin superfamily protein... Potri.010G089900
[exp]
3.31 0.9228
AT5G35730 EXS (ERD1/XPR1/SYG1) family pr... Potri.007G121400
[exp]
4.69 0.9085
AT2G20650 RING/U-box superfamily protein... Potri.007G139300
[exp]
6.32 0.8722
AT3G55990 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29... Potri.010G187600
[exp]
6.63 0.8977
AT5G26330 Cupredoxin superfamily protein... Potri.008G151000
[exp]
8.00 0.8938
AT5G03530 ATRABALPHA, AtR... ARABIDOPSIS THALIANA RAB GTPAS... Potri.010G229600
[exp]
8.36 0.8949 RAB1.1
AT2G38080 ATLMCO4, IRX12,... LACCASE 4, IRREGULAR XYLEM 12,... Potri.006G096900
[exp]
9.48 0.8882 LAC1c,Pt-LAC2.3
AT1G31300 TRAM, LAG1 and CLN8 (TLC) lipi... Potri.012G118100
[exp]
9.79 0.8691

Potri.018G139200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.