Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57110 1211 / 0 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT4G29900 1211 / 0 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) AT3G21180 1186 / 0 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) AT3G63380 867 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G22910 810 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT2G41560 761 / 0 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT3G57330 753 / 0 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT1G27770 731 / 0 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT4G37640 723 / 0 ACA2 calcium ATPase 2 (.1) AT2G22950 718 / 0 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G072900 [exp] 1398 / 0 AT4G29900 1549 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.018G139800 [exp] 1371 / 0 AT4G29900 1566 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.010G250800 [exp] 1237 / 0 AT3G21180 1575 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.008G008100 [exp] 1231 / 0 AT3G21180 1562 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.008G159100 [exp] 884 / 0 AT3G22910 1340 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.005G215600 [exp] 877 / 0 AT3G63380 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G081100 [exp] 874 / 0 AT3G22910 1337 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.013G040201 [exp] 871 / 0 AT3G63380 1198 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.002G047500 [exp] 864 / 0 AT3G63380 1411 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001638 [exp] 1336 / 0 AT4G29900 1599 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10001428 [exp] 1327 / 0 AT4G29900 1593 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10034840 [exp] 1198 / 0 AT3G21180 1647 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Lus10033386 [exp] 1191 / 0 AT3G21180 1615 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Lus10042040 [exp] 765 / 0 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10018687 [exp] 745 / 0 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10016366 [exp] 744 / 0 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10035439 [exp] 741 / 0 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10011522 [exp] 724 / 0 AT4G37640 1704 / 0.0 calcium ATPase 2 (.1) Lus10031053 [exp] 707 / 0 AT2G41560 1480 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00689 [poplar] [flax] Cation_ATPase_C Cation transporting ATPase, C-terminus CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.018G139900.2 pacid=42800469 polypeptide=Potri.018G139900.2.p locus=Potri.018G139900 ID=Potri.018G139900.2.v4.1 annot-version=v4.1 ATGGAACCACAGTATCATATCCACCCCCCATTGGTGATTTTGGAATTAGCCAGGAGCAACTTTCTGAAATCACGAGGGATCACAATCATAATGCCTTGGT GGAAATCGGTAAAAGGGGTTGCAGATGCATTAAAAACAAATTTAGAGAAGGGAATTCATGGAGACCATGCTGATTTACTGAAACGGAAGAGTGCATTTGG ATCAAATACATATCCTCAGAAAAAAGGGAAGAGTTTATGGATTTTTCTTGGGGAAGCTTGTCAAGATCTTACTTTGATCATGTTGATGATAGCTGCGGTG GTTTCTATTGGGCTGGGCATGAAGACAGATGGTATTAAGAAAGGATGGTATGATGGAGCCAGCATTGCTTTTGCAGTTATTGTTGGCGTTGTTGTGACAG CCATAAATGATTACAGACAATATCTTCAATTCAGAATTTTAATCGACGAGAAGAGAAATATTCATGTAGAGGTTATCAGAGATGGCAGAAGACCTAAAGT GTCAATATTCGATGTTGTTGTTGGTGATGTTGTACCCCTTAAAATTGGTGATCAGATACCTGCTGATGGAATTTTGATACCTGGCTGCTCCCTTGATATT GATGAATCTAGCATGACCGGAGAAAGCAAGATTGTTCATAAAAATTCTAGGGAGCCATTTTTAATGTCTGGATGCAAAGTTGTGGATGGTAGCGGCACTA TGCTTGTATCAAGTGTTGGGGTTAATACTAAATGGGGGTTGCTCATGGCTAGTACTTCAGAAGACACTGGTGAAGAAACACCCTTGCAGGTGTACTTAAA TGGGGTTGCAACTTTCATTGGCTCCGTGGGACTTGCATTAGCTGCTGCTGTCTTAGTTGTCCTTTCAGTTAGATTCTTTACTGGGCATACTAAAAATCTA GACGGAAGAGTTCAGTTTAGAGAGGGCAATACTAGTGCTGCTGATGCAATAAATGGAGCCACTAAAATTCTTGCTGTTTCAGTAGCCACCGCTGTAGTTG CAGTGCCTGAGGGGCTTCCTTTAGCTGTTACCCTAATTCTTTCCTTCTTGGTGAAAAAATTGTTGGCAGAGAATGCCTTGGTGCGCAGGCTTTCTGCCTG TGAAACTATGGGCTCCATGACAACTATTTGCACTGATAAGACTGGAACTTTGACCTCAAATTCGATGACTGTTATGGAAGTATATGTTGCTGGACAAAAA ATTGATCCTCCAGACAGCAAGTCGCTGTTGTCTCCTATGTTGTCTTCTTTAGTCATCGAAGGCATTGCACGGAACACAACCGCCAGTGTTTTTATTCCCG AGGGTGAAGGAGATCCAGTTATTTCCGGATCACCAACAGAAAAGGCCATTGTTGAGTGGGGATTCAAGCTGGGGATGGATTTTGATGCCGTCCGATCTGA ATCTTCAGTTATTAGTGTATTCCTATTCAACTCTGAGAAGAAAAAAGGCGGTGTGGCACTGCAACTGCCTGATTCTCAAGTGCATATACATTGGAAGGGG GCTGCTGAAATCATCTTAGCTTCATGTGTGGGTTACTGTGACGCAAATGGTAACCTAGTACAGATGGATAAAGACAAGGAGTTACTTTTTAAGAATGTTA TTGAAGATATGGCAGCCAATAGTTTGCGTTGTATTGCACTTGCTTATAAAACATATGACATGGACAAACTTCCGGTTGATGAACAGGAGCTAGCTCAATG GCCATTGCCTGAAGATGATCTTGTTTTGCTTGCTCTTATTGGCTTAAAGAATCCATGTCACCCAGGTGTCGGAGATGCAGTTCGCACATGCCAAAATGCT GGTATCAAGGTTCGCATGGTAACTGGTGACAATCCTCAAACTGCTAAAGCAATTGCTTTGGAATGTGGGATACTGAGTTCAGAAGAAGATGCTGTGGAGC CTAATGTTATTGAAGGAAGAGTGTTTCGTGAATATTCAGATTCAGAAAGAGAAGACATCGCAGAGAAGATCTCAGTGATGGGGAGGTCTTCTCCGAATGA CAAGCTTTTGCTTGTGCAAGCATTGATAAGGAGGGGACATGTTGTTGCTGTAACTGGAGATGGAACAAATGATGCTCCTGCATTACATGAGGCAGATATT GGTCTTTCAATGGGTAGTCAAGGTACACAAGTTACCAAAGAGGCCTCAGATATTGTTCTCTTGGATGACAACTTCTCTTCAATCCCAAAGGTTGTCCTAT GGGGAAGATCGATATATGTGAATATTAAAAAATTTAAGCAGTTTCAGCTTACAATTATTGTTGCATCTGTCATTATAAACGCAGTGGGTGCAGCTTCTGG TGGTGTCCAGTTAAACACAGTGCAGCTTCTCTGGGTTAATCTTGTCATGGATACTCTTGGAGCATGGGCATTAGTTACTGAGCCACCCACAGATAACCTG ATGCGTATGCCCCCAGTAGGTCGCAGAGAACCTCTAATAACAAACATCTTGTGGAGGAACCTGCTGTTTCAGGTAGCATATCAAGTGACTGTGTTGCTTG TTCTTAATTTTCGAGGAAAGAGTTTACTAGGTTTGGAACATGAAATCCCTCAGCATGCAAACAAAGTGAAGAATACCTTGATATTCAATGCATTCGTGCT CTGTCAAATCTTCAATGAGGTCAATTCCCGGAAGCCTGATGAACTAAATATTTTCAAAGGAATTTTAAAGAGCCATCTGTTCATTGGTATAAATGCAGTG ACACTCCTACTTCAGGTCATCATCATCGAGTTCGGTGGGAAGTTTACTTCCACAGTCAGGCTTAACTGGAAAATGTGGCTGATTTCAGTAGCTATCGCAT TTATGAGCTGGCCTCTTGCCTTCATCGGGAAATTCATACCTGTCCCTAAATCTCCCCTGCATAAGTTCTTTACAAGGAGGTTCCATCGAGGTCGACGTGC TCATGGTTAA
AA sequence Show only first row Show all	>Potri.018G139900.2 pacid=42800469 polypeptide=Potri.018G139900.2.p locus=Potri.018G139900 ID=Potri.018G139900.2.v4.1 annot-version=v4.1 MEPQYHIHPPLVILELARSNFLKSRGITIIMPWWKSVKGVADALKTNLEKGIHGDHADLLKRKSAFGSNTYPQKKGKSLWIFLGEACQDLTLIMLMIAAV VSIGLGMKTDGIKKGWYDGASIAFAVIVGVVVTAINDYRQYLQFRILIDEKRNIHVEVIRDGRRPKVSIFDVVVGDVVPLKIGDQIPADGILIPGCSLDI DESSMTGESKIVHKNSREPFLMSGCKVVDGSGTMLVSSVGVNTKWGLLMASTSEDTGEETPLQVYLNGVATFIGSVGLALAAAVLVVLSVRFFTGHTKNL DGRVQFREGNTSAADAINGATKILAVSVATAVVAVPEGLPLAVTLILSFLVKKLLAENALVRRLSACETMGSMTTICTDKTGTLTSNSMTVMEVYVAGQK IDPPDSKSLLSPMLSSLVIEGIARNTTASVFIPEGEGDPVISGSPTEKAIVEWGFKLGMDFDAVRSESSVISVFLFNSEKKKGGVALQLPDSQVHIHWKG AAEIILASCVGYCDANGNLVQMDKDKELLFKNVIEDMAANSLRCIALAYKTYDMDKLPVDEQELAQWPLPEDDLVLLALIGLKNPCHPGVGDAVRTCQNA GIKVRMVTGDNPQTAKAIALECGILSSEEDAVEPNVIEGRVFREYSDSEREDIAEKISVMGRSSPNDKLLLVQALIRRGHVVAVTGDGTNDAPALHEADI GLSMGSQGTQVTKEASDIVLLDDNFSSIPKVVLWGRSIYVNIKKFKQFQLTIIVASVIINAVGAASGGVQLNTVQLLWVNLVMDTLGAWALVTEPPTDNL MRMPPVGRREPLITNILWRNLLFQVAYQVTVLLVLNFRGKSLLGLEHEIPQHANKVKNTLIFNAFVLCQIFNEVNSRKPDELNIFKGILKSHLFIGINAV TLLLQVIIIEFGGKFTSTVRLNWKMWLISVAIAFMSWPLAFIGKFIPVPKSPLHKFFTRRFHRGRRAHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57110		AT-ACA8, ACA8	"AUTOINHIBITED CA2+ -ATPASE, I...		Potri.018G139900 [exp]	0	1
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.007G007100 [exp]	5.29	0.6786
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Potri.015G029000 [exp]	5.47	0.6464
AT5G50350			unknown protein		Potri.012G094200 [exp]	12.60	0.6278
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Potri.013G025100 [exp]	15.68	0.5534	Pt-CAX11.1
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Potri.005G033700 [exp]	16.12	0.5981
AT1G19270		DA1	DA1 (.1)		Potri.002G132700 [exp]	24.73	0.5852
AT5G05800			unknown protein		Potri.006G116400 [exp]	28.16	0.5905
AT4G03130			BRCT domain-containing DNA rep...		Potri.014G135520 [exp]	31.43	0.5662
AT1G63640			P-loop nucleoside triphosphate...		Potri.001G104000 [exp]	41.91	0.6101
AT1G24330			ARM repeat superfamily protein...		Potri.010G058000 [exp]	43.74	0.5310

Compare expression of checked genes

Potri.018G139900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.