Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62050 365 / 8e-124 ATOXA1, OXA1AT, OXA1 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) AT2G46470 322 / 6e-107 OXA1L inner membrane protein OXA1-like (.1) AT3G44370 73 / 1e-13 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) AT3G49150 72 / 4e-13 F-box/RNI-like superfamily protein (.1) AT1G65080 54 / 1e-07 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) AT1G44890 49 / 3e-06 unknown protein AT2G46455 45 / 3e-05 OxaA/YidC-like membrane insertion protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G073000 [exp] 582 / 0 AT5G62050 373 / 1e-126 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Potri.001G091800 [exp] 441 / 3e-153 AT5G62050 451 / 5e-157 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Potri.013G087950 [exp] 68 / 4e-12 AT3G44370 413 / 1e-138 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) Potri.009G121800 [exp] 60 / 1e-09 AT3G44370 415 / 5e-140 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001427 [exp] 366 / 1e-123 AT5G62050 387 / 4e-132 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10001639 [exp] 364 / 3e-123 AT5G62050 382 / 3e-130 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10023088 [exp] 361 / 7e-122 AT5G62050 412 / 6e-142 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10032381 [exp] 253 / 2e-80 AT5G62050 270 / 4e-87 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10026414 [exp] 60 / 2e-09 AT3G44370 419 / 9e-141 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0376 [poplar] [flax] Oxa1 PF02096 [poplar] [flax] 60KD_IMP 60Kd inner membrane protein
Representative CDS sequence Show only first row Show all	>Potri.018G140100.1 pacid=42802187 polypeptide=Potri.018G140100.1.p locus=Potri.018G140100 ID=Potri.018G140100.1.v4.1 annot-version=v4.1 ATGGCTTACATGCGAAGTCTCTCGAGTCGATCAACCATCTTGAAACGACAATATTATCCGCGTTTCGCATACATCCTCCACGACGACCACCAACAGAAGG AGAAAAACCAAGAACAACTTAATCCCTCCGAAAAACCAGCAATCACTCCCACTAATTACTTTCCTCAAAGATCCTTCTACACCGCTCCAACCGCTTCTTT CGGCTCTCTTCTTCGCGAACCAAATCACACACACTTCGCCGGCGCATGTTTAGTGCGCTACATGTCTACCACCACCGCTACTTCCGCGGCGGAGAATATC GATGTGGTGATGGATATGGCGGCTCCTGCTGTGAATGAGGTTGCGATAGCTGCTGCGGATTCTTTCTTACCTGTTGCGGTTCTTCAGCATGCGATTGATG CTGTTCATAATTTTACTGGATTCAATTGGTGGGCTTCGATAGTTGTGACTACATTGCTTATAAGAAGCTTTACGCTTCCTCTTTTGATAAATCAGTTGAA AGCTACCTCCAAACTCAGTATCGTAAGACCACACTTGGAGGAGGTTAAGCAAAGGGTGGAACGTCAGGGTATGGACCCCACTGCTGTTTCTGAAGGTCAA AAAGAAATGAAGAAGCTGTTTAAGGAACATGGTGTGAGTCCATTTACTCCACTGAAGGGGCTCTTTATTCAAGCTCCTGTCTTCATCAGCTTTTTCCTTG CTATTACAAACATGGCAGAAAAAGTGCCATCCTTTAAAAGTGGTGGAGCATTCTGGTTCGTTGACCTCACAACTGCAGATGATTTATACATCTTTCCAGT TTTGACAGCATTAACTTTCTTGATAACAGTAGAGTGCAACACGCAAGAAGGAATGGAAGGAAATCCTGCAGCTGGCACCATGAAAAACGTTTCAAGGGCC CTTGCTGCTGCTTCAGTTCCTTTGACTATGAGTTTTCCAAAGGCTATATTTTGTTATTGGATTACATCAAACTTGTTTTCACTTACATATGGGCTTGTGC TCAAAGCTCCTGGGGTAAAAGAATTCTTGGGTGTTCCAAAAGTACCTGTGGCACCACCAACTACTGCTGCAAAATCATCTTCCTTTGATCTGTTTTCAGC AATCAAACAACTCTCAACAGCCAGAAAGGAACCTACCCCATCCCTGCCCATTGAACCACCAAAGCTTTTTGAGCATAAAAAGTCTTCATCTTCAGTAATC ACTAAAAGGATAAGAAGTCTAGAGAAAGAAGTAAAGGGAAGAAAGAAAAATAAGAAGAGGTGA
AA sequence Show only first row Show all	>Potri.018G140100.1 pacid=42802187 polypeptide=Potri.018G140100.1.p locus=Potri.018G140100 ID=Potri.018G140100.1.v4.1 annot-version=v4.1 MAYMRSLSSRSTILKRQYYPRFAYILHDDHQQKEKNQEQLNPSEKPAITPTNYFPQRSFYTAPTASFGSLLREPNHTHFAGACLVRYMSTTTATSAAENI DVVMDMAAPAVNEVAIAAADSFLPVAVLQHAIDAVHNFTGFNWWASIVVTTLLIRSFTLPLLINQLKATSKLSIVRPHLEEVKQRVERQGMDPTAVSEGQ KEMKKLFKEHGVSPFTPLKGLFIQAPVFISFFLAITNMAEKVPSFKSGGAFWFVDLTTADDLYIFPVLTALTFLITVECNTQEGMEGNPAAGTMKNVSRA LAAASVPLTMSFPKAIFCYWITSNLFSLTYGLVLKAPGVKEFLGVPKVPVAPPTTAAKSSSFDLFSAIKQLSTARKEPTPSLPIEPPKLFEHKKSSSSVI TKRIRSLEKEVKGRKKNKKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Potri.018G140100 [exp]	0	1
AT2G31240			Tetratricopeptide repeat (TPR)...		Potri.005G222900 [exp]	1.73	0.9169
AT2G17670			Tetratricopeptide repeat (TPR)...		Potri.005G103300 [exp]	2.82	0.9081
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Potri.001G173500 [exp]	4.24	0.8813
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Potri.002G204900 [exp]	5.47	0.8824
AT1G77030			hydrolases, acting on acid anh...		Potri.005G185900 [exp]	6.24	0.8885
AT1G80750			Ribosomal protein L30/L7 famil...		Potri.001G047400 [exp]	6.63	0.8714
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Potri.003G075900 [exp]	7.14	0.8637
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Potri.014G129700 [exp]	8.36	0.8658
AT1G04945			HIT-type Zinc finger family pr...		Potri.001G228000 [exp]	8.48	0.8827
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Potri.012G012800 [exp]	8.83	0.8675

Compare expression of checked genes

Potri.018G140100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.