Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57120 97 / 3e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G073100 [exp] 508 / 5e-178 AT5G57120 102 / 7e-24 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001434 [exp] 150 / 9e-41 AT5G57120 116 / 2e-29 unknown protein Lus10001627 [exp] 147 / 4e-40 AT5G57120 117 / 3e-30 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05022 [poplar] [flax] SRP40_C SRP40, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.018G140200.1 pacid=42800912 polypeptide=Potri.018G140200.1.p locus=Potri.018G140200 ID=Potri.018G140200.1.v4.1 annot-version=v4.1 ATGAAACAAGAAAACAACAAGGACAACAGCAAAACCCAAACTTTAAAGCCTGAGCAGAAGACACTTCTGCTTCATTCTATAGCTAAGTATCTTGAAAACA CTGGTGGGTTTTCCAAAACATTAAAAAAGTTCGAATCTGAAGCCAAATTTGAGAAAGATGATTTGGGTGGTGACTCCTTGATTGATTTGGAGGAGGTGTT TTGCAAGTTTTTGAAGACAAGTGACGATACCAGCAAAAAGTTAGAGAGCAATCAGGTTCAAGATATACAGACGAACGGTGTCACTAAAAAGAAAAAGAAG TGTGATACTGATGCTATAAAAAATCAATTAGGAGCTGGTGATAAAGTTAACAATTCTGAGAGTGTTGAAGAGATCATAACAAATGAAACAGTGGCTACTG AAGTAAGGTCGAAAGAGAAGAAGGAAAAGAAAAGGAATTCTGATTCTCATGGACAAGAGGAACAAGACAATGTCGAAGCTTTGAAGGAACCTGCTGATAA TGGTGCTGGTGAATTGCCTGATAAGAAACGCAAGGACAAAAGGAAGAAGAAAAGCAACTTGGAATCCGAGTCTCAAGATGATAACGATGGACATCATCTG GCAGAATCTGTGTCGGTGGAAGAAAAATCTAAGGATGTGGCATCTTCCAAGGGAAACAAAGTAACTGATGGTGAGACAGATAATAAACCAAAGGATAAGA AGAGAAAGAAAGACAAGCTTTTTGATTCCACTATTGGAAATGGGGAGCAACATATCTTGGAGAGTAAGCAAGGAGCAAATGCTGACAGTATTTTGGACAA CAAGAACATCAAATCTGAACGGAAGAAGAAAAGGAAGGATGCTGTTTTTTCTGAAAATTTGTCTGCTGAGATGCTTGATGAAGGGAAATCAAATTCTGAA AAGGATGACTCTAAGAACTTGAAGGAGGATGTGAATGACAAAGAGAATAAGAGTTCCAAGAAGAGGAAAAGATTGTCTTCTGAAGATGATGCCCCTCAGC CTGCCAATGAAACAGCCATTGAAGAATCTAAACGAAGAAAGACAGAAAGTTCAGAAGAACTAAAGGAAAACGTCCAGGCAAACGGGAACCTTGAGGAAAA TGGAGCGAAATCAGCACCGCAGAAATCTATGATGAAGGAAAAGAATGGTTCTGTTGAGCCAAAGACGGTTAAACATTTTCAAAGAGTAAAAGTTGATGAG GTGGTATTCTCTGATGAGAGGCTTAAAGATAATTCATACTGGGCAAAGGACGGTGCCGAGGATGGTTATGGTGCAAAAGCACAAGAAGTTCTTGGGCAAG TTAGAGGAAGGGGTTTTAGGCATGAAAAAACAAAGAAGAAGCGCGGGACATACAGAGGAGGGCAGATTGATTTGCAATCACACTCATTTAAGTTCAACTA CTCAGATGAAGATTGA
AA sequence Show only first row Show all	>Potri.018G140200.1 pacid=42800912 polypeptide=Potri.018G140200.1.p locus=Potri.018G140200 ID=Potri.018G140200.1.v4.1 annot-version=v4.1 MKQENNKDNSKTQTLKPEQKTLLLHSIAKYLENTGGFSKTLKKFESEAKFEKDDLGGDSLIDLEEVFCKFLKTSDDTSKKLESNQVQDIQTNGVTKKKKK CDTDAIKNQLGAGDKVNNSESVEEIITNETVATEVRSKEKKEKKRNSDSHGQEEQDNVEALKEPADNGAGELPDKKRKDKRKKKSNLESESQDDNDGHHL AESVSVEEKSKDVASSKGNKVTDGETDNKPKDKKRKKDKLFDSTIGNGEQHILESKQGANADSILDNKNIKSERKKKRKDAVFSENLSAEMLDEGKSNSE KDDSKNLKEDVNDKENKSSKKRKRLSSEDDAPQPANETAIEESKRRKTESSEELKENVQANGNLEENGAKSAPQKSMMKEKNGSVEPKTVKHFQRVKVDE VVFSDERLKDNSYWAKDGAEDGYGAKAQEVLGQVRGRGFRHEKTKKKRGTYRGGQIDLQSHSFKFNYSDED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57120			unknown protein		Potri.018G140200 [exp]	0	1
AT2G19080			metaxin-related (.1)		Potri.006G077100 [exp]	2.44	0.8829
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.001G319800 [exp]	3.16	0.8578
AT3G03920			H/ACA ribonucleoprotein comple...		Potri.019G034900 [exp]	3.87	0.8439
AT1G80620			S15/NS1, RNA-binding protein (...		Potri.003G178800 [exp]	4.24	0.8331
AT3G12860			NOP56-like pre RNA processing ...		Potri.015G092900 [exp]	6.00	0.8520	NOP56.1
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.005G061000 [exp]	10.24	0.8397
AT2G27775			unknown protein		Potri.009G148400 [exp]	10.90	0.8193
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.004G029900 [exp]	11.83	0.8298
AT5G60960		PNM1	PPR protein localized to the n...		Potri.017G133400 [exp]	13.85	0.7917
AT3G55605			Mitochondrial glycoprotein fam...		Potri.010G198500 [exp]	14.42	0.8349

Compare expression of checked genes

Potri.018G140200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.