Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13580 359 / 8e-127 Ribosomal protein L30/L7 family protein (.1.2.3) AT2G01250 357 / 7e-126 Ribosomal protein L30/L7 family protein (.1.2) AT2G44120 356 / 1e-125 Ribosomal protein L30/L7 family protein (.1.2) AT1G80750 169 / 5e-52 Ribosomal protein L30/L7 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G073200 [exp] 404 / 1e-144 AT2G44120 363 / 2e-128 Ribosomal protein L30/L7 family protein (.1.2) Potri.010G250900 [exp] 383 / 2e-136 AT3G13580 414 / 2e-148 Ribosomal protein L30/L7 family protein (.1.2.3) Potri.008G008000 [exp] 377 / 3e-134 AT3G13580 410 / 7e-147 Ribosomal protein L30/L7 family protein (.1.2.3) Potri.001G047400 [exp] 214 / 9e-70 AT1G80750 285 / 2e-97 Ribosomal protein L30/L7 family protein (.1) Potri.003G180700 [exp] 207 / 5e-67 AT1G80750 280 / 1e-95 Ribosomal protein L30/L7 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021296 [exp] 353 / 3e-124 AT3G13580 425 / 5e-153 Ribosomal protein L30/L7 family protein (.1.2.3) Lus10016970 [exp] 353 / 3e-124 AT3G13580 425 / 5e-153 Ribosomal protein L30/L7 family protein (.1.2.3) Lus10004220 [exp] 351 / 2e-123 AT2G44120 421 / 4e-151 Ribosomal protein L30/L7 family protein (.1.2) Lus10029423 [exp] 350 / 4e-123 AT2G44120 420 / 6e-151 Ribosomal protein L30/L7 family protein (.1.2) Lus10040040 [exp] 211 / 3e-68 AT1G80750 269 / 4e-91 Ribosomal protein L30/L7 family protein (.1) Lus10019603 [exp] 210 / 4e-68 AT1G80750 269 / 5e-91 Ribosomal protein L30/L7 family protein (.1) Lus10003176 [exp] 67 / 1e-12 AT1G72970 822 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00327 [poplar] [flax] Ribosomal_L30 Ribosomal protein L30p/L7e PF08079 [poplar] [flax] Ribosomal_L30_N Ribosomal L30 N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.018G140300.2 pacid=42800866 polypeptide=Potri.018G140300.2.p locus=Potri.018G140300 ID=Potri.018G140300.2.v4.1 annot-version=v4.1 ATGGGCGGGGAAGAAGTTCAGGTAGCGGTACCAGAGTCTGTGTTGAAGAAGCAAAAAAGGAACGAGGAATGGGCATTGGCTAAGAAGGAAGAGAAGCTAG CTTTGAAGAAGAAGAATGCTGAAAATCGCAAGTTGATTTACAATAGGGCTAAGCAGTATGCCAAGGAGTATGATGATGAGCAAAAGGAGCTTATTAGGCT GAAACGTGAAGCCAGACTCAAGGGAGGGTTCTATGTCAACCCAGAAGCTAAGCTGTTGTTTATCATCAGGATCCGTGGTATCAATGCCATGCACCCAAAG ACAAGATCAATCTTGCAGCTTCTGCGTTTGAGACAGATATTTAATGGTGTATTCCTGAAAGTTAACAAAGCAACCGTGAATATGCTTCACAGGGTTGAGC CTTATGTGACATTTGGGTATCCTAATTTAAAGAGTGTCAAAGAATTGATTTACAAGAGGGGCTTTGGGAAACTAAACCAACAGAGAATTCCCTTGACTGA CAATTCAATCGTTGAGCAGGGCTTGGGCAAGCATGGAATCATCTGCACAGAAGATCTCATCCATGAAATTATTACTGTTGGACCCCATTTCAAGGAGGCA AACAACTTCCTGTGGCCTTTCCAGCTGAAGGCACCACTTGGAGGCTTGAAGAAAAAGAGAAATCATTATGTTGAAGGAGGTGATGCTGGAAATCGTGAGG ATTTTATCAATGAGCTAATCAGGAGGATGAATTAG
AA sequence Show only first row Show all	>Potri.018G140300.2 pacid=42800866 polypeptide=Potri.018G140300.2.p locus=Potri.018G140300 ID=Potri.018G140300.2.v4.1 annot-version=v4.1 MGGEEVQVAVPESVLKKQKRNEEWALAKKEEKLALKKKNAENRKLIYNRAKQYAKEYDDEQKELIRLKREARLKGGFYVNPEAKLLFIIRIRGINAMHPK TRSILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTFGYPNLKSVKELIYKRGFGKLNQQRIPLTDNSIVEQGLGKHGIICTEDLIHEIITVGPHFKEA NNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNREDFINELIRRMN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13580			Ribosomal protein L30/L7 famil...		Potri.018G140300 [exp]	0	1
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Potri.008G110100 [exp]	2.00	0.9396
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Potri.001G454101 [exp]	2.44	0.9409
AT4G27090			Ribosomal protein L14 (.1)		Potri.002G035700 [exp]	2.44	0.9323
AT3G06700			Ribosomal L29e protein family ...		Potri.010G142001 [exp]	7.14	0.9127
AT3G04840			Ribosomal protein S3Ae (.1)		Potri.010G083200 [exp]	7.93	0.9258	RS3.1
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Potri.015G041600 [exp]	9.48	0.9287	Pt-GBF1.2
AT3G16780			Ribosomal protein L19e family ...		Potri.017G140800 [exp]	9.48	0.8839	RPL19.2
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Potri.004G113800 [exp]	10.58	0.9155	RPL7.5
AT2G41840			Ribosomal protein S5 family pr...		Potri.016G055000 [exp]	11.18	0.9300	Pt-RPS2.3
AT4G17520			Hyaluronan / mRNA binding fami...		Potri.001G153000 [exp]	11.31	0.8973

Compare expression of checked genes

Potri.018G140300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.