Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57123 100 / 1e-29 unknown protein AT4G29905 89 / 1e-25 unknown protein AT5G10695 89 / 1e-25 unknown protein AT3G15534 52 / 1e-10 unknown protein AT1G52855 51 / 2e-10 unknown protein AT2G20835 47 / 5e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G073400 [exp] 127 / 7e-41 AT5G57123 97 / 8e-29 unknown protein Potri.018G007300 [exp] 95 / 8e-28 AT5G10695 102 / 6e-31 unknown protein Potri.010G251000 [exp] 66 / 5e-16 AT5G10695 39 / 1e-05 unknown protein Potri.008G007932 [exp] 60 / 7e-14 AT4G29905 54 / 1e-11 unknown protein Potri.008G007800 [exp] 59 / 1e-13 AT4G29905 54 / 1e-11 unknown protein Potri.019G104300 [exp] 52 / 1e-10 AT1G52855 116 / 2e-36 unknown protein Potri.019G104100 [exp] 52 / 1e-10 AT1G52855 116 / 2e-36 unknown protein Potri.001G405400 [exp] 49 / 1e-09 AT1G52855 85 / 9e-24 unknown protein Potri.013G145100 [exp] 48 / 4e-09 AT1G52855 112 / 2e-34 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026229 [exp] 92 / 9e-27 AT5G10695 107 / 1e-32 unknown protein Lus10042440 [exp] 92 / 9e-27 AT5G10695 107 / 1e-32 unknown protein Lus10039793 [exp] 51 / 2e-10 AT2G20835 115 / 7e-36 unknown protein Lus10018561 [exp] 50 / 7e-10 AT2G20835 111 / 2e-34 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G140500.1 pacid=42801667 polypeptide=Potri.018G140500.1.p locus=Potri.018G140500 ID=Potri.018G140500.1.v4.1 annot-version=v4.1 ATGTGTTTTGTGTTTCTATGTGATGAAGAAGAGAGGGAGTTAGGCAGGCAACAAGCTTCAGGGTCATGTCCACACTGTGGAGGTAAAGTACAGGCCGTGG ATTTTGAAAGCCGGTGGAGGTTCTGTTTCTTACCCATTTGCTACAAGAATAAAAGAAAATATTTATGCACTCTATGTTCCAGGAGGCTGGAGTTGTATCA ATATTAA
AA sequence Show only first row Show all	>Potri.018G140500.1 pacid=42801667 polypeptide=Potri.018G140500.1.p locus=Potri.018G140500 ID=Potri.018G140500.1.v4.1 annot-version=v4.1 MCFVFLCDEEERELGRQQASGSCPHCGGKVQAVDFESRWRFCFLPICYKNKRKYLCTLCSRRLELYQY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57123			unknown protein		Potri.018G140500 [exp]	0	1
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.013G041300 [exp]	6.48	0.7148	IAA8.2
AT2G17990			unknown protein		Potri.007G012600 [exp]	10.00	0.7079
AT5G02440			unknown protein		Potri.001G238900 [exp]	11.66	0.7237
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.016G035300 [exp]	14.66	0.7239	PIN2,Pt-PIN2.3
AT1G18610			Galactose oxidase/kelch repeat...		Potri.005G013000 [exp]	19.67	0.6726
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Potri.004G172600 [exp]	21.09	0.6912	Pt-GRP2.3
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.014G085900 [exp]	32.83	0.6858
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.002G121500 [exp]	43.08	0.6785	CYCA3.1
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Potri.007G028000 [exp]	48.37	0.6659
AT2G23530			Zinc-finger domain of monoamin...		Potri.009G108400 [exp]	54.77	0.6698

Compare expression of checked genes

Potri.018G140500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.