Plant FIBer expression Database

Potri.018G140800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G28430 1019 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G073600
[exp]
1348 / 0 AT3G28430 950 / 0.0 unknown protein
Potri.006G204600
[exp]
261 / 3e-75 AT3G28430 285 / 3e-84 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011235
[exp]
1110 / 0 AT3G28430 1015 / 0.0 unknown protein
Lus10018448
[exp]
981 / 0 AT3G28430 892 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09758 FPL Uncharacterised conserved protein
Representative CDS sequence
>Potri.018G140800.2 pacid=42800395 polypeptide=Potri.018G140800.2.p locus=Potri.018G140800 ID=Potri.018G140800.2.v4.1 annot-version=v4.1
ATGTGGTCTTCCTTTTGGAGATCCAGAGATCGTTTCTCCTTAGATGAACTCAGATATTTAATTGATCAGCTGCAAAAAGTTCAAATTGTAAATGATGTTA
ATAAGGACTTTGTAATAGAGGCGTTGAGATCGATATCGGAATTAATAACGTACGGAGACCAGCATGATTCAAACTATTTTGAGTTTTTTATGGAAAGGCA
AGTAATGGGAGAGTTTGTGAGGATACTAAAGGTTAGTAGAACTGTTTCAGTTTCACGTCAGTTGCTGCAAACGATGAGCATCATGATTCAGAATTTAAAA
TCCGAGCACGCAATATATTATTTGTTCAGTAATGAGCATATTAATTTTTTGATAACTTATGCATTTGATTTTAAGAATGAGGAGTTGTTGTCTTACTACA
TTTCTTTCTTGAGGGCAATTAGTGTGAAGCTTGACAAGAACACAATTTCTTTGTTCGTGAAGACGCAAAATGAAGAAGTTGTTTCATTTCCACTGTATGT
TGAGGCTATACGGTTTGCTTTCCATGAAGAGAATATGATCCGTACTGCAGTCCGTGCTCTGGCACTCAATGTCTATCATGTTGGAGATGAATCTGTGAAT
AGATTTGTTGTGAAGGCCCCTCGTGCTGATTATTTTTCAAACTTGCTTACTTATTTCCGGAAGCAGTGCATCGATCTAAATGGATTGGTCTCTGAAACTC
TAAAAAATCCAGACTCAGATACAACCACTGCGATTCTTGCTGCTGTGGATGAAATAGAGGATGATCTCTACTATATTAGTGATGTTATTTCTGCAGGGAT
TCCTGATGTTGGGAGATTAATAACAGACAAAATTATGCAACTTTTGATTCTTCCTTTGCTTCTTCCATCTTTGCAGTTGGATGCTGCTAATGATATTCAG
ATTGGCGCTATCACTTCTCTATATTTGCTCTGTTGCATCTTACGCATAGTTAAAATCAAAGATTTGGCAAATACCATTGCTGCTGCTCTTTTCTGTTCAC
CGGAGGCTTTCATTGCAGATTCTGAAACTAAACTCAATGGTTATGTGCCTGATCATGTGCATGAAATCCAGCAGCCAGAAAATGAGAATGTGATTGAGGT
AAATGGATGTTCAAAACAGATCATGCAGAGCTTGTCTAGTTCTTCCCAAGTTCGTACTGAAGATATTATCTCAAAAGGTGTTTCTCATTCAACTTTGAGG
GATGCTTTGCTTTCATATATTACAGTTGGAGATGATCTTCAAGTTCTGGGTTCTTTGAGCATGCTGGCTACGTTGTTGCAAACAAAAGTAGAATTAGATG
AAATAATGCTAGATGCTCTTGGAATTCTCCCCCAGCGCAAGCAACACAAGAAACTCTTACTGCAAGCATTGGTTGGCGAGGACTCACGGGAAGATCAACT
TTTTTCGCTAGGAAGCAGCTCTATAAGAGATGAATTTAATTGTGAGCTTGATGGCTATCTACAAACTCTAAAGGATCAGTATGGAGTAGCATGCTCTTCT
CTGGAGGTGGGAACAACCCCCTCTGCACATAGATTTCAGGTACTCCACACATTGGTTAGTCTTTTTTGCCGTTCAAATATATCTCCGGAGACATTGTGGG
ATGGTGGTTGGCTTTTTCGTCAGCTACTTCCTTATAGTGAGGCAGAATTCAATAGCCAGCATCTTAAATTACTGAAAGATTCTTATAAGAATTGCACATG
TGCTCTTCTTGAGGAGACCAGAGGTACATGGCCTGATCTACTTGTGTCCATCTTACGTGATGAATGGAAAAAGTGCAAAAGAGCAATGGAAGCTTCGTCT
CCTCCGAAAGAGCCAAAGTGCATACTCTTTCCATTAGAGAAGTCCTCTGCTGATGATGTTCTTCCCAGTGAATCATCAATTATTGCTGGTGAAAAAATGT
GCAAGGTGGTGAAGGTGTTTGTACTTCTTCATCAACTTCACATTTTCTCCCTAGGTAGAGCTTTACCTGACCAGCCTCCTACTTGTCTTCCAAGTGATAT
CCCTGAAAATTCCCGTGCAAGAACTGCTGGCCTGGACGCTTCAGGTCCAAAACTAGGCGCCGAGTTGAGACTAGTTGATGCCGTGCCTTGTAGGATTGCA
TTTGAGAGGGGTAAAGAACGCCATTTTTGCTTTTTAGCAATCTCTGTGGGCACATCTGGGTGGATCCTACTTGCAGAAGAATTACCCTTGAAGAAGCATT
ATGGAATCATCCGTATTGTCGCTCCTCTGGCAGGTTCCAATCCTGCAATTGATGAGAAGCATTCAAGATGGTTACACTTGCGGATCCGTCCATCTACTTT
GCCTGTTTTGGATCCTGCTAAATCCATTACTCATGGGAAGGCTAAGACAAAAGCCCTGGTTGATGGGAGATGGACCTTAGCATTCAGGGATGACGAATCT
TGCAAGACTGCGTTGTCGATGATTATTGAGGAGTTTGATCTGCAAAGCAGTGAAGTCAAGAGAAGACTAAATTCATTGCTCAACATTGAAGGAGGTATAG
ATGTTCCAGACAGTTCTCTACATCCTTCTGAGGCTTCCTCATCAACTCAAACACCTTCCAATTCATCGTAA
AA sequence
>Potri.018G140800.2 pacid=42800395 polypeptide=Potri.018G140800.2.p locus=Potri.018G140800 ID=Potri.018G140800.2.v4.1 annot-version=v4.1
MWSSFWRSRDRFSLDELRYLIDQLQKVQIVNDVNKDFVIEALRSISELITYGDQHDSNYFEFFMERQVMGEFVRILKVSRTVSVSRQLLQTMSIMIQNLK
SEHAIYYLFSNEHINFLITYAFDFKNEELLSYYISFLRAISVKLDKNTISLFVKTQNEEVVSFPLYVEAIRFAFHEENMIRTAVRALALNVYHVGDESVN
RFVVKAPRADYFSNLLTYFRKQCIDLNGLVSETLKNPDSDTTTAILAAVDEIEDDLYYISDVISAGIPDVGRLITDKIMQLLILPLLLPSLQLDAANDIQ
IGAITSLYLLCCILRIVKIKDLANTIAAALFCSPEAFIADSETKLNGYVPDHVHEIQQPENENVIEVNGCSKQIMQSLSSSSQVRTEDIISKGVSHSTLR
DALLSYITVGDDLQVLGSLSMLATLLQTKVELDEIMLDALGILPQRKQHKKLLLQALVGEDSREDQLFSLGSSSIRDEFNCELDGYLQTLKDQYGVACSS
LEVGTTPSAHRFQVLHTLVSLFCRSNISPETLWDGGWLFRQLLPYSEAEFNSQHLKLLKDSYKNCTCALLEETRGTWPDLLVSILRDEWKKCKRAMEASS
PPKEPKCILFPLEKSSADDVLPSESSIIAGEKMCKVVKVFVLLHQLHIFSLGRALPDQPPTCLPSDIPENSRARTAGLDASGPKLGAELRLVDAVPCRIA
FERGKERHFCFLAISVGTSGWILLAEELPLKKHYGIIRIVAPLAGSNPAIDEKHSRWLHLRIRPSTLPVLDPAKSITHGKAKTKALVDGRWTLAFRDDES
CKTALSMIIEEFDLQSSEVKRRLNSLLNIEGGIDVPDSSLHPSEASSSTQTPSNSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G28430 unknown protein Potri.018G140800
[exp]
0 1
AT1G75850 VPS35B VPS35 homolog B (.1) Potri.002G019400
[exp]
1.41 0.9026
AT1G45150 unknown protein Potri.014G180700
[exp]
3.46 0.8921
AT4G24740 AME1, AFC2 FUS3-complementing gene 2 (.1.... Potri.010G049100
[exp]
3.46 0.8937
Potri.010G031250
[exp]
5.91 0.8663
AT3G17310 DRM3, AtDRM3 domains rearranged methyltrans... Potri.010G152200
[exp]
7.48 0.8635
AT4G36980 unknown protein Potri.005G138200
[exp]
8.12 0.8797
AT3G10440 Shugoshin C terminus (.1) Potri.008G032600
[exp]
8.48 0.8352
AT2G47020 Peptide chain release factor 1... Potri.014G114000
[exp]
10.24 0.8262
AT1G05350 NAD(P)-binding Rossmann-fold s... Potri.012G097700
[exp]
10.39 0.8633
AT4G36690 ATU2AF65A U2 snRNP auxilliary factor, la... Potri.005G125500
[exp]
10.48 0.8598

Potri.018G140800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.