Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RHG4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23750 651 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G66150 539 / 2e-177 TMK1 transmembrane kinase 1 (.1) AT2G01820 537 / 7e-177 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 466 / 6e-150 Leucine-rich repeat protein kinase family protein (.1) AT4G02010 260 / 1e-74 Protein kinase superfamily protein (.1) AT5G38560 257 / 4e-74 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G70460 254 / 6e-73 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 253 / 2e-72 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G20650 239 / 1e-70 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT1G52290 243 / 2e-70 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G073900 [exp] 818 / 0 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G035900 [exp] 629 / 0 AT3G23750 1044 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G049200 [exp] 624 / 0 AT3G23750 589 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G084000 [exp] 558 / 0 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.017G134900 [exp] 551 / 0 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.010G103000 [exp] 541 / 3e-178 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G137801 [exp] 531 / 2e-174 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.016G070500 [exp] 501 / 9e-163 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1) Potri.001G217700 [exp] 499 / 4e-162 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039038 [exp] 553 / 0 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 547 / 6e-180 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10003807 [exp] 513 / 4e-167 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10023220 [exp] 509 / 1e-165 AT3G23750 903 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031944 [exp] 506 / 1e-164 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010472 [exp] 502 / 1e-164 AT1G66150 1067 / 0.0 transmembrane kinase 1 (.1) Lus10034432 [exp] 495 / 1e-160 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10019131 [exp] 493 / 6e-160 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10021275 [exp] 483 / 4e-156 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 473 / 3e-152 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.018G141000.1 pacid=42800552 polypeptide=Potri.018G141000.1.p locus=Potri.018G141000 ID=Potri.018G141000.1.v4.1 annot-version=v4.1 ATGGCTGACCTTCTTCTCTCTTTCTTTCTCCTCCTCGCTCTCCTCCTCTCCACCACCACAACAACCACCGCGGATGATGCAGGCACCATGCTAAAACTAG CCTCTGCCCTAACCCCAACACCAAAAGGCTGGTCAACAACAAACACCAATGGTTACTGCAAGTGGAATGGTGTTAAATGTGACAACTCCAACAATGTGAT TTCCATTAACTTAGCTTCTCAAGGTCTTTCAGGGACTCTCCCATCTGAGCTTTCAACGCTTTCTCAGCTTCAAAGTTTGTCTCTTCAAGACAACAAGCTG ATCGGTCCTTTGCCTTCTCTTGCAAATTTAGCTTTTTTGAGAGAAGTTTATATTGGTACTAATAATTTTACCAGTATCCCTGCAGATTTCTTTAAAGGGT TAACTAGTTTGCAAACTTTGAGCATGGATGCGAATATAAATTTGGAACCTTGGGTTCTTTCTACTGATCTAACTGAGTCTTCTAGTTTAAATACTTTTGA GGCTAGTCACGCTAACATCTTTGGTGCTATACCTAATATGTTTGCTTCTTTTCCTAGTTTGCAAAATCTTAGATTGTCTTATAATAACTTAACTGGAGGG TTGCCTCCATCTTTTGCTAATTCTGGGATCCAGAATTTGTGGCTTAATAATCAGGAAATGGGGTTGTCTGGTACTATTGAGGTGTTGCCTTCAATGGAGC AGTTGAGTCAAGTTTGGCTTCAGAAGAATCAGTTTACTGGGCCAATTCCAGATTTTTCAAAGAGCAAGAGTTTGTTTGATTTGCAGTTGAGGGATAATCA GTTTACTGGGATCTTTCCGGTTTCTCTGTCTTCCCAAGCTGGTTTGTTGAATATTTCTTTTTATAATAATAAATTACAAGGTCCTGTGCCTCAGTTTGGA AAAGGTGTTAAAGTTGATAATAGTGGTCTTAATAATTTTTGTGTGGATACTGCTGGCGTTGCTTGTCATCCACAAGTGACCACTTTGCTCGAGATTGCTG GTGGTTTTGGTTATCCTGTGATGCTGTCTGATTCGTGGAAAGGGAATGATGCTTGCAATGGTTGGCCTTTTGTTACCTGTGATTCACAAAAAAAGACTGT CATTACAGTGAGTTTGGGGAAGCAGCATTTTGGAGGGATAATCTCTCCTGCATTTGTTAATCTCACTACTTTGACAACTTTAAAATTGAATGATAATAAT TTATCAGGTCCCATTCCCGATAGCTTGATAAAGTTGTCTCAACTTTCGCTTCTTGATGTCTCCAATAACAATCTCACTGGGAAGATCCCAGCTTTCGCAT CTTCGGTGAAGCTAACCATTACACCAGGTAATCCTTTTCTTGGGAGTGGTGGGGGTTCTGGAAGTGGAGGGACACCATCATCTGGTTCAGATTCAAATAC AACTACACCCGGAGGTGTTCCTAATGGAAGAGGAAATGGTGGTAAGAAGGTGAGTCCAGGTGTGATTGCTGGTGTTGTTGGTATTGTGATTGTTGGTGCT ATTGGCTTCTTCGTGTTGTTTAAGGTTAATCGCAAGAAAAAGAGAGGGAAGTCTGGGAGAGTGAATGATCAAGAGAGTGGGAATGGAATCAATGCATTGG TTAAGAATGGTTCATCGTGTTGCACGAATGGGTACGGGGTTCTCAGTGAAATACAAAGTCAAAGTAGTGGCAACCATAGTGGCCGGCACTTTTTTGAGGG TGGGAACGTTGTGATTTCAATCGAGGTACTTAGACAAGTAACTGATAATTTCAGCGAGAATAACATTCTGGGTAAGGGAGGTTTTGGTGTGGTTTATAAG GGCGAATTGCATGATGGGACTAAGATTGCTGTGAAGCGGATGGAATCTGGGGCAATGGGGACAAAAGGAATGAATGAGTTTCAGGCAGAGATTGCAGTGC TTACTAAAGTGAGGCACAGGCATTTAGTTGCTCTTTTGGGTTACTGTATAAATGGAAATGAGAGGCTCTTGGTGTATGAGTACATGCCACAGGGGACTCT CGCTCAACATTTGTTTGAATGGCAAGAACTTGGTTACCCTCCTCTTACTTGGAAACAGAGGGTTACAATTGCACTGGATGTGGCTCGAGGAGTGGAATAC CTGCACAGCTTAGCTCAGCAGAGTTTCATTCATAGAGATTTGAAGCCTTCAAACATACTTCTTGGAGATGACATGAGAGCTAAGGTTGCTGATTTTGGTT TGGTTAAAAATGCGCCTGATGGGAAGTATTCTATGGAGACAAGGCTGGCAGGAACCTTTGGCTATCTTGCACCCGAATATGCTGCTACTGGAAGGGTTAC AACAAAAGTGGATGTATATGCTTTTGGAGTGATTTTGATGGAGATTATGACAGGGAGAAAAGCTCTAGATGATACAGTGCCAGATGAAAGGGCTCACTTG GTCACATGGTTCCGCCGTGTCCTAGTCAACAAGGACAACCTTCCAAAGGCAATTGACCAAACTCTGAATCCTGACGAGGAGACCTTTGTGAGCATTTTCA AAGTGGCCGAGCTAGCAGGGCATTGCACAGCTCGTGAGCCACACCAAAGACCAGATATGGGCCATGCTGTCAACGTCTTAGGACCTCTAGTAGAACAATG GAAACCTACCAACCATGAAGAGGAAGGCAATTCTGGCATTGATCTCCACATGAGCCTTCCTCAGTTTCTCCAAAGATGGCAAGCTGATGAAGGTACTTCG ACAACGTTTAACAACATGTCTTACTCCCAATCCCAATCAAGTATTCCAGGAGGATTTTCAGACTCATTTACTTCAACCGATTGTCGGTGA
AA sequence Show only first row Show all	>Potri.018G141000.1 pacid=42800552 polypeptide=Potri.018G141000.1.p locus=Potri.018G141000 ID=Potri.018G141000.1.v4.1 annot-version=v4.1 MADLLLSFFLLLALLLSTTTTTTADDAGTMLKLASALTPTPKGWSTTNTNGYCKWNGVKCDNSNNVISINLASQGLSGTLPSELSTLSQLQSLSLQDNKL IGPLPSLANLAFLREVYIGTNNFTSIPADFFKGLTSLQTLSMDANINLEPWVLSTDLTESSSLNTFEASHANIFGAIPNMFASFPSLQNLRLSYNNLTGG LPPSFANSGIQNLWLNNQEMGLSGTIEVLPSMEQLSQVWLQKNQFTGPIPDFSKSKSLFDLQLRDNQFTGIFPVSLSSQAGLLNISFYNNKLQGPVPQFG KGVKVDNSGLNNFCVDTAGVACHPQVTTLLEIAGGFGYPVMLSDSWKGNDACNGWPFVTCDSQKKTVITVSLGKQHFGGIISPAFVNLTTLTTLKLNDNN LSGPIPDSLIKLSQLSLLDVSNNNLTGKIPAFASSVKLTITPGNPFLGSGGGSGSGGTPSSGSDSNTTTPGGVPNGRGNGGKKVSPGVIAGVVGIVIVGA IGFFVLFKVNRKKKRGKSGRVNDQESGNGINALVKNGSSCCTNGYGVLSEIQSQSSGNHSGRHFFEGGNVVISIEVLRQVTDNFSENNILGKGGFGVVYK GELHDGTKIAVKRMESGAMGTKGMNEFQAEIAVLTKVRHRHLVALLGYCINGNERLLVYEYMPQGTLAQHLFEWQELGYPPLTWKQRVTIALDVARGVEY LHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSMETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVILMEIMTGRKALDDTVPDERAHL VTWFRRVLVNKDNLPKAIDQTLNPDEETFVSIFKVAELAGHCTAREPHQRPDMGHAVNVLGPLVEQWKPTNHEEEGNSGIDLHMSLPQFLQRWQADEGTS TTFNNMSYSQSQSSIPGGFSDSFTSTDCR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23750			Leucine-rich repeat protein ki...		Potri.018G141000 [exp]	0	1	Pt-RHG4.1
AT1G68410			Protein phosphatase 2C family ...		Potri.008G123600 [exp]	2.44	0.8503
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Potri.009G167800 [exp]	4.47	0.8378
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.011G128000 [exp]	18.97	0.7812
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Potri.010G235000 [exp]	22.13	0.8054
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.001G405500 [exp]	23.45	0.7869
AT3G23750			Leucine-rich repeat protein ki...		Potri.006G073900 [exp]	23.49	0.7594	RHG4.2
AT4G03965			RING/U-box superfamily protein...		Potri.002G224200 [exp]	32.31	0.8055
AT3G16850			Pectin lyase-like superfamily ...		Potri.010G005500 [exp]	39.79	0.8129
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Potri.011G056800 [exp]	47.32	0.7884
AT2G01210			Leucine-rich repeat protein ki...		Potri.010G120100 [exp]	51.06	0.7951

Compare expression of checked genes

Potri.018G141000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.