Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51590 813 / 0 MNS1, MANIB ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) AT3G21160 792 / 0 MNS2, MANIA ALPHA-MANNOSIDASE IA, alpha-mannosidase 2 (.1) AT1G30000 347 / 4e-112 MNS3 alpha-mannosidase 3 (.1) AT5G43710 192 / 2e-53 Glycosyl hydrolase family 47 protein (.1) AT1G27520 189 / 9e-53 Glycosyl hydrolase family 47 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007500 [exp] 850 / 0 AT1G51590 885 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Potri.004G132300 [exp] 357 / 6e-116 AT1G30000 934 / 0.0 alpha-mannosidase 3 (.1) Potri.015G071400 [exp] 192 / 5e-54 AT1G27520 931 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.008G160900 [exp] 192 / 2e-53 AT5G43710 908 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.012G076600 [exp] 142 / 1e-35 AT1G27520 657 / 0.0 Glycosyl hydrolase family 47 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034820 [exp] 844 / 0 AT1G51590 887 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10035727 [exp] 838 / 0 AT1G51590 877 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10037312 [exp] 837 / 0 AT1G51590 865 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10033368 [exp] 706 / 0 AT1G51590 747 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10042830 [exp] 355 / 3e-115 AT1G30000 846 / 0.0 alpha-mannosidase 3 (.1) Lus10028127 [exp] 244 / 7e-75 AT1G30000 622 / 0.0 alpha-mannosidase 3 (.1) Lus10042143 [exp] 192 / 8e-54 AT1G27520 886 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10021888 [exp] 187 / 6e-52 AT5G43710 853 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10041170 [exp] 187 / 2e-51 AT5G43710 885 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10004233 [exp] 68 / 6e-12 AT1G27520 515 / 0.0 Glycosyl hydrolase family 47 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF01532 [poplar] [flax] Glyco_hydro_47 Glycosyl hydrolase family 47
Representative CDS sequence Show only first row Show all	>Potri.018G141100.2 pacid=42800941 polypeptide=Potri.018G141100.2.p locus=Potri.018G141100 ID=Potri.018G141100.2.v4.1 annot-version=v4.1 ATGGGAAAAAAATCTTCTTCAAATTCCACTTCTTTATCAGTTTTTAATCCAAAATACTACTTCAAAAAACCCCAACAACTTGTTCTTGTCATTTTTGGAT TTATCTCTCTAGTTTTGCTTGTTTCTGACCGTCAAAATCTTACCAGAGAACACCAAGAAGAGGTTTTGAGATTGAATGAAGAATTGGCACAGCTAAAATT GCAGCTTGAAGATTTTAATGTAAAGGTTCAATGGTCAGCAGGTCTGGACAGTGCAGACATTAGCAAAGATGATGATGATGATCCTGTTAGTGTTGAAAGA AGAGAGAAAGTCAAGGAAGCTATGCTTCATGCTTGGACTTCTTATGAGAAGTATGCTTGGGGCCATGATGAACTTCAGCCACAAACAAAGAATGGAGTTG ATAGCTTTGGTGGTCTTGGAGCAACTCTAGTGGATTCTCTTGATACATTATTTATAATGGGTCTTCATGAGCAGTTTCAAAGAGCCAAAGAGTGGGTTGC GAACTCATTGGATTTCAACAAGGATTATGAGGCTAGTGTCTTTGAGACAACCATAAGGGTTGTTGGAGGGCTTCTCAGTGCTTATGATCTTTCTGGCGAC AAAATTTTTCTTGAAAAGGCTAAAGATATTGCAGATAGATTGCTGCCTGCATGGAATTCTCCTTCAGGAATTCCCTATAACAGAATTAATTTAGCGCGTG GGAGTGCACACAACTTTGGGTGGACTGGGGGAAACAGTATCCTGGCAGATTCTGGAACAGAGCAGCTTGAATTCATTGCTTTATCTCAAAGAACAAAAGA CCCAAAATATCAGGAGAAGGTAGAGAAAGTCGTAAAAGAGCTTCAGAAAACCTTTCCAGCTGATGGTTTACTTCCCATATATATTAATCCTCGCTCTGGA ACAGCTGCTTACTCAACAATAACATTTGGTGCCATGGGGGATAGCTTTTATGAGTATTTACTCAAGGTGTGGATACAAGGGAACAAAACAGAAGCTGTGA AGCACTACAGAGAGATGTGGGAGACATCGATGAAAGGTCTCCAAAGCTTGGTTCGGAAAACAACCCCATCATCCTTCACATACATTTGCGAGAAGAATGG AAATTTTTTATCTGACAAGATGGATGAATTGGCATGCTTTGCTCCTGGCATGTTGGCTTTAGGATCTAAAGGTTATGGCTCTGGTGAAGCCGAAAAGGTT TTATCACTTGCAGAAGAGCTTGCATGGACTTGTTATAATTTCTACCAGTTGACACCTACAAAACTGGCTGGAGAGAACTATTACTTTCACCCTGGACAGG ACATGAATGTCGGCACTTCATGGAACATTTTGAGGCCTGAGACAGTTGAATCACTCTTTTACCTGTGGCGTATCACTGGAAACAAGACATACCAAGAATG GGGTTGGAATATTTTTCAATCATTCGAAAAGAACTCCCGCTTGGAGACTGGATATGTTGGTCTTAAGGATGTGAACTCAGGTATCAAAGACAACAAGATG CAGACTTTCTTCCTTGCCGAGACGCTCAAGTATCTGTACCTCCTATTCTCACCTACATCCGTCATCTCTCTGGATGAATGGGTATTCAACACAGAAGCAC ACCCTCTGAGAATTGTGACTCGAGGTGATCTTCATCAAGAGAATGTTCAAGTTGACAGACAACAAAAGTTACCAATTCATCTTCGTGGTAGAAAGGAGGG TCGACTAGGATACAATTAG
AA sequence Show only first row Show all	>Potri.018G141100.2 pacid=42800941 polypeptide=Potri.018G141100.2.p locus=Potri.018G141100 ID=Potri.018G141100.2.v4.1 annot-version=v4.1 MGKKSSSNSTSLSVFNPKYYFKKPQQLVLVIFGFISLVLLVSDRQNLTREHQEEVLRLNEELAQLKLQLEDFNVKVQWSAGLDSADISKDDDDDPVSVER REKVKEAMLHAWTSYEKYAWGHDELQPQTKNGVDSFGGLGATLVDSLDTLFIMGLHEQFQRAKEWVANSLDFNKDYEASVFETTIRVVGGLLSAYDLSGD KIFLEKAKDIADRLLPAWNSPSGIPYNRINLARGSAHNFGWTGGNSILADSGTEQLEFIALSQRTKDPKYQEKVEKVVKELQKTFPADGLLPIYINPRSG TAAYSTITFGAMGDSFYEYLLKVWIQGNKTEAVKHYREMWETSMKGLQSLVRKTTPSSFTYICEKNGNFLSDKMDELACFAPGMLALGSKGYGSGEAEKV LSLAEELAWTCYNFYQLTPTKLAGENYYFHPGQDMNVGTSWNILRPETVESLFYLWRITGNKTYQEWGWNIFQSFEKNSRLETGYVGLKDVNSGIKDNKM QTFFLAETLKYLYLLFSPTSVISLDEWVFNTEAHPLRIVTRGDLHQENVQVDRQQKLPIHLRGRKEGRLGYN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Potri.018G141100 [exp]	0	1
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.009G119132 [exp]	41.56	0.7277
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Potri.003G142800 [exp]	98.98	0.6733
AT5G20710		BGAL7	beta-galactosidase 7 (.1)		Potri.001G025701 [exp]	112.46	0.6766
AT5G63970			Copine (Calcium-dependent phos...		Potri.007G103700 [exp]	161.60	0.6605
AT3G53120		VPS37-1	Modifier of rudimentary (Mod(r...		Potri.006G119200 [exp]	167.43	0.6592
					Potri.001G078000 [exp]	180.99	0.6522
AT5G57940		ATCNGC5	cyclic nucleotide gated channe...		Potri.018G106100 [exp]	183.70	0.6521	CNGC5.1
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G109100 [exp]	255.92	0.6249

Compare expression of checked genes

Potri.018G141100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.