Plant FIBer expression Database

Potri.018G141166 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G26020 119 / 7e-34 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.018G141166.1 pacid=42800737 polypeptide=Potri.018G141166.1.p locus=Potri.018G141166 ID=Potri.018G141166.1.v4.1 annot-version=v4.1
ATGATTCAATTACTTTCCTCCGAGATGACTGTTCTTTTCTGCGTGATGATTATGCATGTTAGAGGGTTTCTACTTGGGAAGGAAACAAATGAAGCAACTG
TGACTCACCTCCGCCAAGATTTAGCAGCGCATAGAGCTCATATGCAAACTCTAGCAAACAGGTTGGACCGTGTAGCTTTCGAGGTGGAATCAAAATATCA
TCTTGAGCTTCAGGATCTGAAGGATTGCCTCATGGTTGAACAAGAAGAGAAAAATGAGTTGAATAAGAAACTCCAGGGTTTGGAAAAGGAATTGCTGATT
AGCAAAACAAAGCGGGTTGAACAGCAGCAAGATTTGGCTTCCAGTCGACTTGTTGAAACACTAAAACAGAAGATTATGAAGCTGAGAAAGGAGAATGAGA
TCCTGAAAAGGAAGCTTTCTCATTCAGAGGAGGGCTAA
AA sequence
>Potri.018G141166.1 pacid=42800737 polypeptide=Potri.018G141166.1.p locus=Potri.018G141166 ID=Potri.018G141166.1.v4.1 annot-version=v4.1
MIQLLSSEMTVLFCVMIMHVRGFLLGKETNEATVTHLRQDLAAHRAHMQTLANRLDRVAFEVESKYHLELQDLKDCLMVEQEEKNELNKKLQGLEKELLI
SKTKRVEQQQDLASSRLVETLKQKIMKLRKENEILKRKLSHSEEG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G26020 unknown protein Potri.018G141166
[exp]
0 1
AT3G09085 Protein of unknown function (D... Potri.016G110900
[exp]
12.56 0.8055
Potri.011G008676
[exp]
23.49 0.7648
AT1G75720 Plant protein of unknown funct... Potri.019G021000
[exp]
24.91 0.7842
AT5G48460 Actin binding Calponin homolog... Potri.002G251600
[exp]
25.09 0.7750
AT1G30620 MURUS4, HSR8, U... UDP-D-XYLOSE 4-EPIMERASE 1, MU... Potri.011G156100
[exp]
26.11 0.7816 MUR4.2
AT1G17030 unknown protein Potri.004G062000
[exp]
33.13 0.7856
Potri.014G082200
[exp]
34.13 0.7901
AT1G25145 AtLpxC4 lipid X C4, UDP-3-O-acyl N-ace... Potri.010G106400
[exp]
41.76 0.7844
AT1G31280 AGO2 argonaute 2, Argonaute family ... Potri.015G117350
[exp]
48.29 0.7283
AT2G01600 ENTH/ANTH/VHS superfamily prot... Potri.008G132100
[exp]
51.69 0.7743

Potri.018G141166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.