Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57150 214 / 2e-69 bHLH bHLH035 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G29930 193 / 7e-62 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G16910 77 / 4e-16 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G28160 69 / 2e-13 bHLH ATFIT1, ATBHLH29, bHLH029, FIT1, ATBHLH029, FRU ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) AT1G12860 68 / 6e-13 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G26744 67 / 8e-13 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT1G63650 63 / 2e-11 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G21330 58 / 3e-10 bHLH bHLH022, DYT1 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 58 / 1e-09 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT1G10610 57 / 4e-09 bHLH bHLH090 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G141600 [exp] 449 / 2e-162 AT5G57150 191 / 2e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074600 [exp] 339 / 3e-118 AT5G57150 168 / 3e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G141700 [exp] 305 / 2e-105 AT5G57150 205 / 4e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074700 [exp] 284 / 4e-97 AT5G57150 175 / 2e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G141800 [exp] 283 / 9e-97 AT5G57150 256 / 6e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074800 [exp] 282 / 1e-96 AT5G57150 181 / 1e-56 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074900 [exp] 259 / 5e-87 AT5G57150 200 / 3e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.010G041500 [exp] 85 / 5e-20 AT2G16910 109 / 7e-28 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G136300 [exp] 87 / 1e-19 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006951 [exp] 238 / 3e-79 AT5G57150 243 / 2e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10016151 [exp] 79 / 5e-17 AT2G28160 235 / 1e-75 ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) Lus10030609 [exp] 79 / 7e-17 AT2G16910 239 / 1e-74 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030880 [exp] 79 / 2e-16 AT2G16910 224 / 7e-69 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10025463 [exp] 74 / 1e-14 AT2G18850 525 / 0.0 SET domain-containing protein (.1.2) Lus10021416 [exp] 67 / 2e-13 AT2G28160 191 / 7e-61 ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) Lus10018395 [exp] 65 / 2e-12 AT4G21330 131 / 1e-37 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007618 [exp] 64 / 3e-12 AT4G21330 141 / 2e-42 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10043199 [exp] 65 / 1e-11 AT3G26744 387 / 1e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10032542 [exp] 64 / 1e-11 AT3G26744 386 / 6e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.018G141500.2 pacid=42801932 polypeptide=Potri.018G141500.2.p locus=Potri.018G141500 ID=Potri.018G141500.2.v4.1 annot-version=v4.1 ATGGAATCTTTTGAGGATATTTCTGAGTACCAAAATTACTGGGAGATGACTAGCATGTTTTTGAATGATGAGCTTAAAAGTTGGGCAATGGATCAGGCAT CTAGCCATTACTATGACTCAAGCTCGCCGGACGAAGCTGCTTCAGCAATAGCCTCTAAAAATACAGTTTCAGAGAGAAACAGGAGGAAAAAGCTTAATGA CAAGCTCTTGGAACTTAGACAAGCAGTCCCCAAAATCAGCAAGTTGGATAAGGCTTCTACAATCAAAGATGCTATTGACTACATCCAAGATTTGCAAGAA CAAGAGACGAGACTCCAAGCTGAGATAATGGAACTTGAATCTGAGAGATCTGAGAAAGATAAGGGTTATGAATTTGAGAGAGAGCTACCAGTCTTGTTAA CATCCAAGAAAACAAGATATGACCACATTTCTGATCACAGAGAGCCCAGAAGTGATCCCATAGAAGTTCATCAACTTAGGGTCTCGTCCATGGGAGAGAA GACTCTGTTTGTGAGTTTGACATGCAGTCAAGCTAGAGAAGCAATGGTTAAGATCTGCGAGGTTTTTGAATCTTTAAAGCTGAAAATTATTACAGCAAGT GTCACATCTGTCTCAGGGATGTTCAAGAAGACAATCTTGATAGAGGCAGATGTAGAAGAGAGAGATCATCTGAAGTCAAGAATAGAAAGAGCTATTAAGG CTCTAAGTGGTCCATATAACCCTCAAATCATGTAG
AA sequence Show only first row Show all	>Potri.018G141500.2 pacid=42801932 polypeptide=Potri.018G141500.2.p locus=Potri.018G141500 ID=Potri.018G141500.2.v4.1 annot-version=v4.1 MESFEDISEYQNYWEMTSMFLNDELKSWAMDQASSHYYDSSSPDEAASAIASKNTVSERNRRKKLNDKLLELRQAVPKISKLDKASTIKDAIDYIQDLQE QETRLQAEIMELESERSEKDKGYEFERELPVLLTSKKTRYDHISDHREPRSDPIEVHQLRVSSMGEKTLFVSLTCSQAREAMVKICEVFESLKLKIITAS VTSVSGMFKKTILIEADVEERDHLKSRIERAIKALSGPYNPQIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.018G141500 [exp]	0	1
AT5G24500			unknown protein		Potri.015G005100 [exp]	1.00	0.8644
AT3G14360			alpha/beta-Hydrolases superfam...		Potri.003G073800 [exp]	7.87	0.7765
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.006G221200 [exp]	9.94	0.8006
					Potri.012G009711 [exp]	10.58	0.8405
AT3G25597			unknown protein		Potri.008G111500 [exp]	11.22	0.8092
					Potri.018G031850 [exp]	14.96	0.8086
AT4G14790		ATSUV3, EDA15	embryo sac development arrest ...		Potri.010G084100 [exp]	16.24	0.7824
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.003G128000 [exp]	21.81	0.7754	Pt-GL3.2
AT1G67025			unknown protein		Potri.017G117230 [exp]	22.71	0.8368
AT5G18810		SCL28, At-SCL28	SC35-like splicing factor 28 (...		Potri.010G026100 [exp]	24.12	0.8096	SCL28.2

Compare expression of checked genes

Potri.018G141500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.