Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	LIG4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57160 1373 / 0 ATLIG4 DNA ligase IV (.1) AT1G08130 103 / 4e-22 ATLIG1 DNA ligase 1 (.1) AT1G49250 98 / 1e-20 ATP-dependent DNA ligase (.1) AT1G66730 85 / 4e-16 AtLIG6 DNA LIGASE 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G005900 [exp] 113 / 4e-25 AT1G08130 1073 / 0.0 DNA ligase 1 (.1) Potri.004G094200 [exp] 98 / 4e-20 AT1G66730 1656 / 0.0 DNA LIGASE 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020013 [exp] 1340 / 0 AT5G57160 1352 / 0.0 DNA ligase IV (.1) Lus10016149 [exp] 100 / 4e-21 AT1G08130 1015 / 0.0 DNA ligase 1 (.1) Lus10017623 [exp] 94 / 5e-19 AT1G66730 1584 / 0.0 DNA LIGASE 6 (.1) Lus10021418 [exp] 82 / 2e-15 AT1G08130 1015 / 0.0 DNA ligase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF04679 [poplar] [flax] DNA_ligase_A_C ATP dependent DNA ligase C terminal region CL0459 [poplar] [flax] BRCT-like PF12738 [poplar] [flax] PTCB-BRCT twin BRCT domain
Representative CDS sequence Show only first row Show all	>Potri.018G141900.1 pacid=42802117 polypeptide=Potri.018G141900.1.p locus=Potri.018G141900 ID=Potri.018G141900.1.v4.1 annot-version=v4.1 ATGGCTTCCTCTTCCTCTTCGTCGTCAACTGCGCACACGAAATTCTCCATCTTAGTGAGTCTCTTCAACTGGATTTCAAAGACCAAAACTTCCTCCAGAA AACGCTCTAAATTCCGCAAATTCATCGACACTTTCTGCTCTCCGTCCGATTACTTCTCCGCCGTCCGCTTGATCCTACCTAACCTCGACCGCGAACGCGG CACTTATGGTCTCAAAGAATCTGTCCTCGCCGTTTCCCTCATTGAAGCACTCGGCATGTCCAGGGATTCCCCTGATGCCTTGAAGTTGATTAATTGGCGT AAAGGTGGCGCCAACGCTACCGGTGCTAATGCCGGCAATTTCTCTCTCGTTGCTGCCGAAGTGTTGCAGCGGAGGCAGGGAACGGTGTCGGGTGGGTTGA CGATTGAGGAGCTGAATGGTTTGCTTGATAAATTGGCATCCAGTGAAAATAGGGGTGAGAAAACTGCAGTACTTGCTGCTTTGATAAACAAGACAAATAC ACAGGAAATGAAGTGGATTATTATGATTATTCTTAAAGATTTGAAGTTGGGGATGAGTGAAAAGAGTGTATTTCATGAATTTCACCCGGATGCGGAAGAC TTGTTTAATGTTACATGTGACTTGAAATTGGTTTGTGAAAAGCTGAGGGATCGAAATCAAAGGCATAAACGTCAGGATATTGAAGTTGGAAAAGCAGTGC GCCCTCAACTAGCAATGAGAGTTAGTGATGCACATGCTGCATGGAAAAAGTTGCATGGGAAGGAAGTGGTGGTGGAATGTAAATTTGATGGTGATCGCAT CCAAATACATAAGAATGGTGCGGAAGTACACTATTTCTCAAGGAACTTTCTAGATCACTCTGAATATGCTCATGGAATGTCGGACATTATTGTACAAAAT GTTTTGGATGAGAGGTGTATTCTTGATGGTGAAATGCTGGTCTGGGATACATCTTTGAATCGGTTTGCAGAGTTTGGTTCAAATCAAGAAATAGCAAAGG CTGCAAGGGATGGGCTTGATAGTGATAGACAGTTATGCTATGTTGCATTTGATATTCTTTATGTTGGAGATACAAGTGTGATTCACCAAACCTTGAAGGA AAGGCATGAGCTGCTCCGTAAAGTTGTCAAGCCAGTGAAGGGTCGTTTAGAGATCTTAGTACCTAATGGGGGTCTTAATGCTCATCGTCTTCCTGGGGAA CCTTATTGTTCGCTTATTGCATATAACGTGGATGACATTGAGAAGTTTTTTAAGGAAACCATTGAAAACAGGGATGAAGGTATTGTATTAAAAGACCTTG GTTCCAAATGGGAACCAAGTGATCGGAGTGGAAAGTGGTTGAAACTGAAGCCTGAGTACATTCGTGCTGGTTCTGACTTAGATGTTCTTATCATAGGGGG ATACTATGGTTCTGGACGTCGTGGAGGAGAGGTGGCTCAATTCTTGTTGGGTCTAGCAGAGCGTCCTGCTTCTAATACATATCCCAGGCGATTTATCTCC TTTTGCAGAGTGGGCAATGGGCTGTCAGATGAGGAGCTGGATACTGTTGTCTCCAAACTAAAGCCTTATTTTAGGAAGAATGAATACCCAAAGAACTCAC CACCAAGTTTTTATCAAGTTACAAATAATTCAAAAGAGAGACCAGATGTGTGGATTGAAAACCCTGACAAATCAATTATACTTTCCATTACCAGTGATAT TCGGACTATAAGTTCTGAGGTGTTTTCTGCCCCATACAGCTTGAGATTTCCGCGTATTGACAGAGTGAGATATGACAAGCCTTGGCATGAATGTCTTGAT GTGCAGTCATTTGTAGAGCTAGTACATTCAAGTAATGGTACCACACAAAAAGGAAAAGGGTACGGATATGTGCAAGATAGCAAACCGACACACATAAAAT CCTCTAGGAAAGGAGAGAAAAAGAGTGTGTCTGTTGTTCCATCTCATTTAATTCAGACTGATATTTCTGACATCAAGGGGGAAACTTTGATATTTTCAAA TATGATGTTTTACTTTGTCAATGTGCCTCCATCTAATTCTCTCGAATCCTTGCACAAAATGGTTGCTGAGAATGGGGGAACTTTCTCAATGAATTTAAAT AACTCAGTCACCCATTGTATAGCTGCTGAAAGCAAAGGGATTAAATATCAAGCAGCAAAGCTTCACGGAGATATTATTCATTATTCATGGGTCTTGGATT GCTGTTTGCAAAAGAAGCTCCTTCCATTGCAGCCAAAGTCCTTCCTTTTCCTCTCTGATGGTTCAAAGAAGAAGTTACACGAAGAAATTGATGAATTTTC TGATTCTTACTACTGGGACCTTGATCTTTCAGACATCAAACAGCTTTTGAGCAACATAAATGCATCAGAAGATGCCAAAGCCATAGACGACTTAAAGCAA AAGTACTGTCCAGAGGAAAAATGGTCTCTGTTTCATGGCTGCTGTGTATATTTTCACATTTCAAGAGAGTCTTTAACACCCGATTGGGAATCCTTGTTGG GACTTGCATTTAGGAGGTTGAAACTTGAAATTTTCATGGGTGGTGGCAAAGTCAGCAATAATATTGCTCATGCCACTCATTTGGTGGTCCTGATTGTACC AGCATCTGATGTGGATTTTGGTTCCCTTGTGAAAAGTTTCACAACTGCAGAGAAACATTTTCTCCTGAATAAGAGGTTGTATGTGATTGGATCTCAATGG TTGGAGGACTCTTTGGAGAGGGGGCAAAAGTTGCTAGAGGATACATATAACTTGAAACCCTCTGGTTTGGAAGAGTCAAACTGCAAAGAAGTTGTATGTG ACCTAGATATGGAAGAAGCAACTCCCATTTTAGATGGTGCAGAAAATGAGAGATTGCCATCAGTTACTGATAGTGAAGCCAAGGAGAAAGGAAGCAAAGC AGCTTTAAAAGATTCAAATAAACTGGGCTCACTTGAAAAGGAGACAACAAGGAAAAGAGGAAGGCCTGCTGGTGGGAGCACAAAAAAAGGAAAAATAGGC GCTGGCCAAGCTCGAAGAACACGGGCACGAATTGTAAACAAGCCTGCTAAAATATCCGTAGAAAAATCAGACGAAAGCTGTTCTCATGATGATAAAAATG AAGAAAATGATACGAGTGATGGAGATGATGAAATTCATGGAGGGAAGCCTGCTGGTGGGATAACAAAGAAACGAAAAATGGGTGCTGGCCTAGCTCGAAG AACACGTGCATGCATCGTAAACAAGCCTGCTAAAATATCTGAAGAAAAACCAGATGAAAGCTGTTCTCATGATGATAAAAATGAAGAAAACGAAATGAGT GAAGGAAATTATGAAATTCATGGAGGGAGGCCTGCTGGTGGGAGCACAAAGAAGGGAAAAATAGGTGCTGGCCAAGCTCTAAGAACACGGACACGAATAG CAAACAAGCCTGCTAAAATACTTGAAGAGAAATCAGAAGAAAGCTGTTTGCATGATGATGAAATTGAAGAAAACGAAATGAGTGAAGGAAATGAAGAAAT TCATGGGCCAGTTAGCAAGTACAATTTGGATATCCAACAAACTAAAACGGTAGAAGATTCAGAATCATCACGGAGAGATAAAGCAAAGGAGGAGACTGCT GAAGAGAACAGACATGAAGAGTGGTTAGATAAAGCTCCTGATGTTGAAATGAGCGAAAGGTATTATGACCAGGTGACTGAGAAGCCTGAGAAACTAGAAG TCATGGTCGATCCAGTTCATGCCATCTTAATGGACATGATTCCAAGCCTTGGTATAAAGAAGGGGGAGACCACAAATCCAACAATTGACAATGAAAAGCA AGCTGAAGGTCCCTATGCACAGTCAAGCCTCAGTATGAAGAAGGCGGAAAATACAACTCCAACCCTAGATACCGAAAAGCCAGCTGAAAATCCCAGTTTA CTGTCAGTGAAGAAGAAAGTCAGCTACAAAGATCTTGCTGCCAAACTGCTCATGAATTAG
AA sequence Show only first row Show all	>Potri.018G141900.1 pacid=42802117 polypeptide=Potri.018G141900.1.p locus=Potri.018G141900 ID=Potri.018G141900.1.v4.1 annot-version=v4.1 MASSSSSSSTAHTKFSILVSLFNWISKTKTSSRKRSKFRKFIDTFCSPSDYFSAVRLILPNLDRERGTYGLKESVLAVSLIEALGMSRDSPDALKLINWR KGGANATGANAGNFSLVAAEVLQRRQGTVSGGLTIEELNGLLDKLASSENRGEKTAVLAALINKTNTQEMKWIIMIILKDLKLGMSEKSVFHEFHPDAED LFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAMRVSDAHAAWKKLHGKEVVVECKFDGDRIQIHKNGAEVHYFSRNFLDHSEYAHGMSDIIVQN VLDERCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYVGDTSVIHQTLKERHELLRKVVKPVKGRLEILVPNGGLNAHRLPGE PYCSLIAYNVDDIEKFFKETIENRDEGIVLKDLGSKWEPSDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLLGLAERPASNTYPRRFIS FCRVGNGLSDEELDTVVSKLKPYFRKNEYPKNSPPSFYQVTNNSKERPDVWIENPDKSIILSITSDIRTISSEVFSAPYSLRFPRIDRVRYDKPWHECLD VQSFVELVHSSNGTTQKGKGYGYVQDSKPTHIKSSRKGEKKSVSVVPSHLIQTDISDIKGETLIFSNMMFYFVNVPPSNSLESLHKMVAENGGTFSMNLN NSVTHCIAAESKGIKYQAAKLHGDIIHYSWVLDCCLQKKLLPLQPKSFLFLSDGSKKKLHEEIDEFSDSYYWDLDLSDIKQLLSNINASEDAKAIDDLKQ KYCPEEKWSLFHGCCVYFHISRESLTPDWESLLGLAFRRLKLEIFMGGGKVSNNIAHATHLVVLIVPASDVDFGSLVKSFTTAEKHFLLNKRLYVIGSQW LEDSLERGQKLLEDTYNLKPSGLEESNCKEVVCDLDMEEATPILDGAENERLPSVTDSEAKEKGSKAALKDSNKLGSLEKETTRKRGRPAGGSTKKGKIG AGQARRTRARIVNKPAKISVEKSDESCSHDDKNEENDTSDGDDEIHGGKPAGGITKKRKMGAGLARRTRACIVNKPAKISEEKPDESCSHDDKNEENEMS EGNYEIHGGRPAGGSTKKGKIGAGQALRTRTRIANKPAKILEEKSEESCLHDDEIEENEMSEGNEEIHGPVSKYNLDIQQTKTVEDSESSRRDKAKEETA EENRHEEWLDKAPDVEMSERYYDQVTEKPEKLEVMVDPVHAILMDMIPSLGIKKGETTNPTIDNEKQAEGPYAQSSLSMKKAENTTPTLDTEKPAENPSL LSVKKKVSYKDLAAKLLMN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57160		ATLIG4	DNA ligase IV (.1)		Potri.018G141900 [exp]	0	1	LIG4.1
AT5G47490			RGPR-related (.1)		Potri.001G157800 [exp]	1.41	0.7962
AT5G57250			Pentatricopeptide repeat (PPR)...		Potri.018G143800 [exp]	1.73	0.8175	CYP71.3
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Potri.012G066300 [exp]	2.64	0.7628	ATDGK1.1
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Potri.005G124300 [exp]	5.19	0.7879
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.013G150100 [exp]	5.91	0.7743
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Potri.014G018000 [exp]	7.07	0.7494
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Potri.010G210100 [exp]	7.41	0.7475
AT5G11700			unknown protein		Potri.018G058300 [exp]	7.74	0.7752
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Potri.013G038301 [exp]	8.06	0.7444
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.017G085000 [exp]	13.63	0.7631

Compare expression of checked genes

Potri.018G141900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.