Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57180 160 / 5e-44 CIA2 chloroplast import apparatus 2 (.1.2.3) AT4G25990 152 / 3e-41 CIL CCT motif family protein (.1.2) AT1G07050 96 / 8e-23 CCT motif family protein (.1) AT1G73870 93 / 2e-20 CO COL7 B-box type zinc finger protein with CCT domain (.1) AT5G14370 92 / 3e-20 CCT motif family protein (.1) AT1G25440 89 / 8e-19 CO COL16 B-box type zinc finger protein with CCT domain (.1) AT1G68520 87 / 3e-18 CO COL6 B-box type zinc finger protein with CCT domain (.1) AT1G49130 84 / 1e-17 CO COL8 B-box type zinc finger protein with CCT domain (.1.2) AT5G24930 61 / 5e-10 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT5G57660 61 / 6e-10 CO COL5, ATCOL5 CONSTANS-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G075200 [exp] 561 / 0 AT5G57180 267 / 5e-85 chloroplast import apparatus 2 (.1.2.3) Potri.001G281700 [exp] 100 / 6e-24 AT1G07050 138 / 8e-41 CCT motif family protein (.1) Potri.009G077100 [exp] 91 / 5e-21 AT1G07050 119 / 3e-34 CCT motif family protein (.1) Potri.001G339200 [exp] 91 / 5e-20 AT5G14370 174 / 5e-52 CCT motif family protein (.1) Potri.015G054600 [exp] 92 / 6e-20 AT1G25440 272 / 2e-87 B-box type zinc finger protein with CCT domain (.1) Potri.010G125100 [exp] 92 / 7e-20 AT1G25440 311 / 3e-102 B-box type zinc finger protein with CCT domain (.1) Potri.008G120400 [exp] 91 / 2e-19 AT1G25440 314 / 2e-103 B-box type zinc finger protein with CCT domain (.1) Potri.006G173600 [exp] 69 / 2e-12 AT5G57660 315 / 1e-105 CONSTANS-like 5 (.1) Potri.006G267700 [exp] 66 / 1e-11 AT5G24930 361 / 1e-123 CONSTANS-like 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020012 [exp] 117 / 7e-28 AT5G57180 211 / 2e-60 chloroplast import apparatus 2 (.1.2.3) Lus10015330 [exp] 100 / 3e-23 AT5G57180 136 / 1e-36 chloroplast import apparatus 2 (.1.2.3) Lus10025459 [exp] 97 / 5e-22 AT5G57180 138 / 2e-37 chloroplast import apparatus 2 (.1.2.3) Lus10015538 [exp] 89 / 4e-19 AT5G57180 130 / 8e-34 chloroplast import apparatus 2 (.1.2.3) Lus10014886 [exp] 72 / 3e-13 AT5G14370 152 / 3e-42 CCT motif family protein (.1) Lus10022311 [exp] 70 / 9e-13 AT5G14370 141 / 1e-38 CCT motif family protein (.1) Lus10041449 [exp] 68 / 4e-12 AT1G25440 288 / 4e-93 B-box type zinc finger protein with CCT domain (.1) Lus10026238 [exp] 64 / 5e-11 AT5G24930 163 / 9e-48 CONSTANS-like 4 (.1) Lus10042431 [exp] 63 / 5e-11 AT5G24930 180 / 7e-55 CONSTANS-like 4 (.1) Lus10026909 [exp] 61 / 7e-10 AT5G24930 404 / 3e-140 CONSTANS-like 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G142100.1 pacid=42801977 polypeptide=Potri.018G142100.1.p locus=Potri.018G142100 ID=Potri.018G142100.1.v4.1 annot-version=v4.1 ATGTCTTCTCCATGTTTAAGTGGAGGTGGGAGAACCTATGGATTCGATCTAGAAATAGTCAAATCCTCATCTACTTCCTCAACAAGAACATCACACACAT CTTCACCATCTTCAACTATCTCTGAATCTAGCAATTCCCCATTAGCAATCTCAACTAGAAAACCAAGAACAACTCGTAAAAGGCCTAATCAAACTTACAA TGAAGCAGCTGCCCTTCTTTCCTCTGCCTATCCAAACGTCTTCTCCAGCAAACACCTCACAAAATCTAGCAAATTCACCAAACCCCATGACAACAGTATC CTCCTTGACCAATCCCCTGACTTGTTATTGCCTTTGCGCGTTTTTGACAACTCTGGATTCCTACTCCACCAACCAATCCAAGAAAAACCCAGATTTGGAA ATGAGTCAAAAGTTGCAAATCTTAGAGACAAGTCATCTTGCCAGAGCAGTGGGGAAGTTGACTTCCATGGGAATTCAATGGAATTATGTGATGGTTTTGA TGAGGATTTCGATGCCGAATCGATTCTTGACGAGGAAATCGAGGAGGGTATTGATAGTATTATGGGGAATTTAAGTGTAGGCAATGAAATGGTTGATGAG GTGCCTAATGGCATTAGTCCTAGCTATGGTCATGATGGTGGCCAAACGAATTCCTGGTATGGGAATTCAATGGAATATAATTTTGGCGGGAAATCACAAT TTGGTCATGGAATGGCGATGAGAAGAGGTGTGAGAGCTTTGAGACAAGTTGATGAAGGAAATTGGTGGCATTTTCCCTTTGTTGATATGTTACAAATCTC TCCAAGACTCAACACCTCATCCACCACCACCACCACCACCACCACCACCGCGGCTGCCACCAGAAATGCCAATGGCAACAACAGTCCAGATTGCAATTCA ATTCCCAAGCCAAAGCCAAAATCAAAGTTGAAAATGAAATCCAACTCGAGCAGCGAAAAGAAGAAAAAGAAGCTGGAGAAAGTGGAGATGCCTGCCGTGG TGGAAATGAAGAATGAGGAATTGGAAGAGGAAAATCCAATCAAGGAGAATTCAATTCCACAATCCAATCAAAGGTTGATATTGAAATTGAATTACGACAA CGTTTTGAACGCGTGGTCCGACCGTGGTTCGCCATTTTCCGAGGAAACTATGGGGTCTGCTGAAGGAACTGATGTCTCTGCCAGGCTGGCACAAATTGAT TTGTTCTCAGAGAATGGAATGAGAGAAGCTAGCGTGTTGCGCTACAAAGAAAAGCGGCGTACACGCCTTTTCTCTAAGAAGATCAGGTACCAGGTCAGGA AAGTCAACGCTGATCAACGGCCCAGAATGAAGGGGAGATTTGTGAGAAGGCCAAATCCAAGTACAAGTAGTGATGAACATGAGGAGAGGAAAAAGAAGAC TTTCAAGTTGTGA
AA sequence Show only first row Show all	>Potri.018G142100.1 pacid=42801977 polypeptide=Potri.018G142100.1.p locus=Potri.018G142100 ID=Potri.018G142100.1.v4.1 annot-version=v4.1 MSSPCLSGGGRTYGFDLEIVKSSSTSSTRTSHTSSPSSTISESSNSPLAISTRKPRTTRKRPNQTYNEAAALLSSAYPNVFSSKHLTKSSKFTKPHDNSI LLDQSPDLLLPLRVFDNSGFLLHQPIQEKPRFGNESKVANLRDKSSCQSSGEVDFHGNSMELCDGFDEDFDAESILDEEIEEGIDSIMGNLSVGNEMVDE VPNGISPSYGHDGGQTNSWYGNSMEYNFGGKSQFGHGMAMRRGVRALRQVDEGNWWHFPFVDMLQISPRLNTSSTTTTTTTTTAAATRNANGNNSPDCNS IPKPKPKSKLKMKSNSSSEKKKKKLEKVEMPAVVEMKNEELEEENPIKENSIPQSNQRLILKLNYDNVLNAWSDRGSPFSEETMGSAEGTDVSARLAQID LFSENGMREASVLRYKEKRRTRLFSKKIRYQVRKVNADQRPRMKGRFVRRPNPSTSSDEHEERKKKTFKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57180		CIA2	chloroplast import apparatus 2...		Potri.018G142100 [exp]	0	1
AT5G46580			pentatricopeptide (PPR) repeat...		Potri.003G089600 [exp]	4.47	0.9746
AT4G16390		SVR7	suppressor of variegation 7, p...		Potri.006G019000 [exp]	5.47	0.9709
AT5G42310			Pentatricopeptide repeat (PPR-...		Potri.005G250200 [exp]	5.47	0.9687
AT1G54520			unknown protein		Potri.005G049500 [exp]	6.32	0.9725
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Potri.019G100800 [exp]	8.12	0.9487	Pt-RMA1.1
AT5G11480			P-loop containing nucleoside t...		Potri.006G243200 [exp]	9.59	0.9693
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Potri.012G091800 [exp]	10.58	0.9523
AT3G02060			DEAD/DEAH box helicase, putati...		Potri.014G145000 [exp]	11.61	0.9524
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Potri.013G067200 [exp]	11.95	0.9605
AT4G13670		PTAC5	plastid transcriptionally acti...		Potri.001G049900 [exp]	12.72	0.9673

Compare expression of checked genes

Potri.018G142100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.