Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19260 205 / 5e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G09790 54 / 3e-07 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT5G24330 50 / 5e-06 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT3G01460 50 / 5e-06 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT1G77250 47 / 4e-05 RING/FYVE/PHD-type zinc finger family protein (.1) AT4G14700 47 / 5e-05 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT5G44800 45 / 0.0002 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT4G12620 45 / 0.0003 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G075400 [exp] 833 / 0 AT2G19260 202 / 3e-55 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G277400 [exp] 221 / 2e-64 AT2G19260 169 / 4e-46 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.018G142201 [exp] 204 / 6e-61 ND / Potri.012G018300 [exp] 54 / 1e-07 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.015G009632 [exp] 52 / 8e-07 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.007G109900 [exp] 52 / 1e-06 AT5G09790 473 / 1e-167 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) Potri.017G072460 [exp] 50 / 4e-06 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.005G058000 [exp] 49 / 8e-06 AT5G09790 481 / 2e-170 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) Potri.005G183700 [exp] 48 / 3e-05 AT1G77250 315 / 2e-100 RING/FYVE/PHD-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020162 [exp] 176 / 3e-48 AT2G19260 156 / 1e-41 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10015537 [exp] 172 / 6e-47 AT2G19260 86 / 9e-18 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10020012 [exp] 167 / 6e-43 AT5G57180 211 / 2e-60 chloroplast import apparatus 2 (.1.2.3) Lus10042764 [exp] 50 / 6e-06 AT1G77250 301 / 1e-95 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10028655 [exp] 49 / 2e-05 AT1G77250 259 / 1e-79 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10029733 [exp] 49 / 2e-05 AT1G77250 313 / 5e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10036223 [exp] 49 / 3e-05 AT5G44800 1780 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10030625 [exp] 48 / 4e-05 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10000973 [exp] 47 / 5e-05 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031846 [exp] 47 / 6e-05 AT4G14700 943 / 0.0 origin recognition complex 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Potri.018G142300.4 pacid=42802195 polypeptide=Potri.018G142300.4.p locus=Potri.018G142300 ID=Potri.018G142300.4.v4.1 annot-version=v4.1 ATGTTGATACCGAGTTCCCTTCCTAATTCAATTGAATCTACTCCATTTCATGTATCTGATCATGGGAAACAGAATTTATTTTGTGAAGTCACGCCTGGTA CTGAAATTTGGCAGATGGGCCCAAAATGTCATGAACACTGCCACGATTGCTGTAAAGAAGCTGCTTCAATAACCGGGGAAAAGGAGGGTAACAATTATTC ATGCCTGTTAAGTTTTCCGAGAAGTCCTCATCCACCAACCACCAGTAAAATGTCTGAAAGTTCTGCACCTAATTTTGTATATAGTAGAAGGAAATTACAA GGAAATACTATTGACTTTTTATCCGCAATCACAGAGGGATCTGGTGAGGATTGTCCTTATGTCATAAATTCTGATGGTTCCTCAGTTCCAGTTAAGGAGC ACCATGTAGGTTCTGAAGATGAGCATGAGACTGAAGCTGTTAGAGAATCTCTCATGTCTCCTCTAATATGCAATGGAGCTGAATATTCACATCCCTTATC TTTTGGAAGACGTGCTCAGCTTACAACTGTCAGTCCAGTGTCCGAAGGTGCTGCCCCTAATTTTGTATATGGGAGAAGGAAGCTGCAACAAAACTCTGTT ACCTTTTCATCAACTCAGGTCCCTGCAATGGAAAAGAGAAGTGGAGAGGATTGTCTTTCAGTGATCAGTTCCAATGGTCCTTCATTTGCACACAAGGAGG AACGCCTAGTTTCTCAATATGAGCATGGAGCTGCCCTTATGCTTCCTCCCACAGTATATTCTTCTTGCCAATTAAGTTTACAAAGAAGTCCTCAGCTACC TACTTTCAGTACAATGTCTGAAATTTCTGCAAGTAAGTTTGTATACAGTAGAAGGAAGATGCGAGGAAACTCTGTTACCTTTTTGTCAGCACAGGTCCCT GGAATCACAAAGAGAAGCAGACAAGATTGCCTTTCAGTTGTCAGTTCTGATGGTCCTTCCCTTGCAGTTGAGGAGGCATGTGTAGTTTCTCAAGATCAAC ATGAAAGTGGATGTTCGCTTCAAAATGGAGAGCCGCATGTTTCAAAATCAGAATCTAGTAGTGGATGTTCGCTTGTTGAAGACCAGGTTTCTGATGAAGC TTCAAAAAAGAGCAGGCCGAAAATCATTGAGGTTGACGGTGTAAATGATAGTTGCTCATCATCAAAGTCAGATGTGGAACTTGTTTCAGCTTCTACAAAG ACTGAAGGACATGATAATGGTGAGTGCTCTTCATCCACTGTAATGGCAGCAGAGTTCGCAAGGGAAGACCAGTCTGAAAAACACAGGTGTATCTCTATAC TCGGAAAGCAGAGGGCTTTTGATGGAATTTGGCCTGGAAAAACCCGTGCTTCTGCCAGAAGAATTGGTGATGGTAGTGGTAGCAGCAGTTCGCGGTCATG CAAAAAATGTTTCCTTAAAGAGTCCCCAGCAAAGATGCTAATTTGTGATAACTGTGAAGATTCATTTCATGTATCTTGCTGCAATCCTCATGTAAAAAGA ATACCAATTGATGAATGGTTATGTCGTTCATGTATGAAGAAGAAACGAATAATTCCCAACGAGAGAATTTCCAGAAAACCTCTCAATATAATTGGTGACA TGGGCAGATGTAGAGATGCTTCATCTATAGGTGAATCTGATCCTATAGCATTGATGTTGACAGATACTGAGCCATATACAGGTGGTGTTCGAGTTGGTAA AGGTTTTCAAGTAGAAGTTCCAGATTGGTCAGGTCCCATTATCAATGATGTCGACACTATTGGCAAACCTGTGGTATTGGATACATCATACTTTGTCAGT TTGCATGAATTGAAGTACAACAAACCTTCTAAATTTGGCTCTATAGGTAATTGGCTTCAATGTAGACAGGTCATAGATGATGCAGCAGAAGGTGGCAATG TAACTATATGTGGAAAATGGCGCAGGGCTCCTCTTTTTGAAGTCCAAACTGATGACTGGGAATGCTTCTGCTGTGTCTTTTGGGATCCAATTCATGCTGA CTGTGCTACACCTCAGGAGCTGGAAACTGATGAAGTTATGAAGCAGCTAAAGTATATTCAGATGCTGAGACCCCAAATAGCTGCTAAACGGCAGAAATTA AAACATGCCAACAAAGGTGATCCAACGGATGATTGCAAGGAGTGA
AA sequence Show only first row Show all	>Potri.018G142300.4 pacid=42802195 polypeptide=Potri.018G142300.4.p locus=Potri.018G142300 ID=Potri.018G142300.4.v4.1 annot-version=v4.1 MLIPSSLPNSIESTPFHVSDHGKQNLFCEVTPGTEIWQMGPKCHEHCHDCCKEAASITGEKEGNNYSCLLSFPRSPHPPTTSKMSESSAPNFVYSRRKLQ GNTIDFLSAITEGSGEDCPYVINSDGSSVPVKEHHVGSEDEHETEAVRESLMSPLICNGAEYSHPLSFGRRAQLTTVSPVSEGAAPNFVYGRRKLQQNSV TFSSTQVPAMEKRSGEDCLSVISSNGPSFAHKEERLVSQYEHGAALMLPPTVYSSCQLSLQRSPQLPTFSTMSEISASKFVYSRRKMRGNSVTFLSAQVP GITKRSRQDCLSVVSSDGPSLAVEEACVVSQDQHESGCSLQNGEPHVSKSESSSGCSLVEDQVSDEASKKSRPKIIEVDGVNDSCSSSKSDVELVSASTK TEGHDNGECSSSTVMAAEFAREDQSEKHRCISILGKQRAFDGIWPGKTRASARRIGDGSGSSSSRSCKKCFLKESPAKMLICDNCEDSFHVSCCNPHVKR IPIDEWLCRSCMKKKRIIPNERISRKPLNIIGDMGRCRDASSIGESDPIALMLTDTEPYTGGVRVGKGFQVEVPDWSGPIINDVDTIGKPVVLDTSYFVS LHELKYNKPSKFGSIGNWLQCRQVIDDAAEGGNVTICGKWRRAPLFEVQTDDWECFCCVFWDPIHADCATPQELETDEVMKQLKYIQMLRPQIAAKRQKL KHANKGDPTDDCKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19260			RING/FYVE/PHD zinc finger supe...		Potri.018G142300 [exp]	0	1
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.013G041201 [exp]	5.19	0.7932
AT3G10140		RECA3	RECA homolog 3 (.1)		Potri.006G048000 [exp]	12.00	0.7126
AT4G00500			alpha/beta-Hydrolases superfam...		Potri.014G083600 [exp]	12.04	0.7484
AT4G24900			unknown protein		Potri.012G098000 [exp]	12.48	0.7528
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.003G110300 [exp]	15.87	0.7518
AT5G15270			RNA-binding KH domain-containi...		Potri.014G045000 [exp]	18.33	0.6954
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Potri.006G201100 [exp]	22.53	0.7510
AT1G77250			RING/FYVE/PHD-type zinc finger...		Potri.002G076900 [exp]	25.37	0.7354
AT5G54260		MRE11, ATMRE11	ARABIDOPSIS MEIOTIC RECOMBINAT...		Potri.001G407300 [exp]	28.30	0.7316	Pt-MRE11.1
AT3G48120			unknown protein		Potri.015G070100 [exp]	37.78	0.7356

Compare expression of checked genes

Potri.018G142300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.