Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29940 461 / 2e-152 HD PRHA pathogenesis related homeodomain protein A (.1.2) AT3G19510 206 / 9e-57 HD HAT3.1 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) AT3G01460 45 / 0.0002 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G075500 [exp] 1017 / 0 AT4G29940 466 / 6e-154 pathogenesis related homeodomain protein A (.1.2) Potri.001G298400 [exp] 195 / 3e-52 AT3G19510 292 / 1e-86 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G093000 [exp] 187 / 2e-49 AT3G19510 291 / 3e-86 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Potri.001G083700 [exp] 44 / 0.0002 AT2G46680 132 / 3e-38 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.017G072460 [exp] 45 / 0.0003 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.015G065400 [exp] 43 / 0.0005 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015536 [exp] 557 / 0 AT4G29940 440 / 4e-144 pathogenesis related homeodomain protein A (.1.2) Lus10020011 [exp] 554 / 0 AT4G29940 429 / 7e-141 pathogenesis related homeodomain protein A (.1.2) Lus10018741 [exp] 199 / 7e-54 AT3G19510 304 / 4e-92 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10024826 [exp] 149 / 3e-37 AT3G19510 224 / 1e-62 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10029733 [exp] 45 / 0.0003 AT1G77250 313 / 5e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10008796 [exp] 44 / 0.0008 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Potri.018G142400.1 pacid=42801981 polypeptide=Potri.018G142400.1.p locus=Potri.018G142400 ID=Potri.018G142400.1.v4.1 annot-version=v4.1 ATGGGTGATTCTGGAAAGAAATCAAAGCAGCAAGACTTGCACGAATCTTCACCATCTGACACAGTGAATGGGTCGTTGCTGATTAAATCATTGAAGATAA AGAAGGGTGGCAAATTATCTCATAGAAAAAGCGAAAAACCTAAAACTAAACCTCATCTGAAAACTATCATTAATTCATCTGTATCAAAGAAAAAGGTTAC TCCTAAGAAGGGCATCAGGAATGGCTCTACCAGTAGAAGATTGATTCACAGGAAAATTCTGCATAAAGCACTTGATAAGAAGGCCTCAAGAAATGGGGCT TCCTCAGAGCTCCAAGGCAAACAGTTGTCAACTATTGATTCTGAGGGGAATGGAAAAAATGCCGATGAAGGTGCAATTAAAAAAGTCAAGAAGAGGAAGC CTAAGAAAAGGCAAAAGGACAAGGTAAAGCTAGATGAACCACCACGCTTGCAGAGGAGAGCAAGGTACTTGATGATTAAAATGAAGCTGGAGCAGAATCT TATAGATGCTTACTCTGGAGAAGGTTGGAAAGGTAAAAGTCGAGAGAAGATTCGGCCAGAAAAGGAACTACTGAGAGCCAGGAAACAGATTTTGAAATGT AAACTTGGATTACGTGAAATAATTCGGCAGGTGGATTCTCTAAGTACAGTAGGATGTATTGAAGATGCTGTTATGGCTCCAGATGGATCTGTTTCCCATG AACATATATTCTGTGCGAAGTGCAAATTGAATGAAGTTTCCCAAGATAATGATATTGTACTCTGTGATGGGACATGCAACTGTGCCTTCCACCAAAAATG CCTTGATCCTCCTTTGGATACTGAAAATATACCTCCAGGAGATCAGGGATGGTTTTGCAAGTTCTGTGACTGTAGGATGGAAATTATAGAAGCCATGAAT GCTCATTTGGGGACCCACTTCTCAGAGGACAGCGGTTGGCAGGATATTTTCAAAGAAGAAGCAGCAGTTCCAGATGGTGGAAATATGCTATTAAATCCAG AAGAAGAATGGCCTTCTGATGATTCTGAAGATGATGATTATGATCCAGAGAGGAGAGAGAACGTCATGAGTGGAGCAGGTACTGATGATGATGCATCTGA TGACACCAGCAATTCAACCCGCTTGAGTTGGTCTTCAGATGGTGAGGTTTTTTCAGGATCCAGGAGGTGGGAGGTGGACGGCTTGGACTTCAGAAACAAT TCTATTTATAGCAGTTTAGATTCTGATGAAACCAGTGATGGGGAAATTATTTGTGGCCGTAGGCAGAGAAGAGCGGTTGATTATAAGAAGTTATACAATG AGATGTTTGGAAAGGACGCTCCTGCACATGAGCAACCCAGCGAAGATGAAGATTGGGGTCCTAGCAAAAGAAAGCGACGAGAGAAGGAGTCAGATGCAGC CAGCACCCTAATGACTCTATATGAAAGTAAAAGAAGATGTAAAAATGATGCAACCATTGAAGGCATGATGAAGCTTCCACGAGATCCTCAAATTCGAAGG CCAATTTTCAGGCTCCCCCCTGATGCTGTTGAGAAACTTCGCCAGGTATTTGCAGAGAATGAACTTCCATCTAGAACTGTCAAGGAGAATCTATCAAAAG AATTGGGCCTTGAACCTGGGAAGGTTAGCAAATGGTTCAAGAATTCCCGTTATTTAGCTCTGAAGTCTAGAAAGGTAGAGAAGGGAGAACAAGTTCATTA TTCTAGTTCCAAAGTCTCTGCTGAACCCACTTTAAATGTCATGAAGGACAAAACTGCTGATCTTTCACTGTTAAAGGATAGCCAGGCAGAAACTGGGGTG TGTACCCCAGAGAATTTGAAAAGGATCTTGCAGAGGAAGAAGCCGAGGTCAATAAGTAAAAGTTTAAAGAAAAATGAACAGAAAAGAGGTTCCTTCGAAT CACCTACTAAAAGCAATGAGATGAATGTTGAGCACAATGATGATCTGAGCTTGAAGAAGCTGTTAAAAGCAAAAACAAAGGGAGTAAAGAAAAAGGGTAA TCGTATTTCAGCAGCTGCTGAATCTGATATGGAGAAACTTTGTAGAGCAAAGACGAGAGTAGAGAATCTGAAGCAGAAACTGGTGAAACTACAAACTGGC AAAGCTAGGAAGTCTTCCAAAATCCGTCCGCTAGACGAATCTGTTGTCTACGTTCCTATTGCTGAGCTAAGAGAAAAGAAATGA
AA sequence Show only first row Show all	>Potri.018G142400.1 pacid=42801981 polypeptide=Potri.018G142400.1.p locus=Potri.018G142400 ID=Potri.018G142400.1.v4.1 annot-version=v4.1 MGDSGKKSKQQDLHESSPSDTVNGSLLIKSLKIKKGGKLSHRKSEKPKTKPHLKTIINSSVSKKKVTPKKGIRNGSTSRRLIHRKILHKALDKKASRNGA SSELQGKQLSTIDSEGNGKNADEGAIKKVKKRKPKKRQKDKVKLDEPPRLQRRARYLMIKMKLEQNLIDAYSGEGWKGKSREKIRPEKELLRARKQILKC KLGLREIIRQVDSLSTVGCIEDAVMAPDGSVSHEHIFCAKCKLNEVSQDNDIVLCDGTCNCAFHQKCLDPPLDTENIPPGDQGWFCKFCDCRMEIIEAMN AHLGTHFSEDSGWQDIFKEEAAVPDGGNMLLNPEEEWPSDDSEDDDYDPERRENVMSGAGTDDDASDDTSNSTRLSWSSDGEVFSGSRRWEVDGLDFRNN SIYSSLDSDETSDGEIICGRRQRRAVDYKKLYNEMFGKDAPAHEQPSEDEDWGPSKRKRREKESDAASTLMTLYESKRRCKNDATIEGMMKLPRDPQIRR PIFRLPPDAVEKLRQVFAENELPSRTVKENLSKELGLEPGKVSKWFKNSRYLALKSRKVEKGEQVHYSSSKVSAEPTLNVMKDKTADLSLLKDSQAETGV CTPENLKRILQRKKPRSISKSLKKNEQKRGSFESPTKSNEMNVEHNDDLSLKKLLKAKTKGVKKKGNRISAAAESDMEKLCRAKTRVENLKQKLVKLQTG KARKSSKIRPLDESVVYVPIAELREKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Potri.018G142400 [exp]	0	1
AT5G26740			Protein of unknown function (D...		Potri.005G000232 [exp]	9.79	0.8067
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Potri.001G255000 [exp]	12.00	0.7872
AT1G13630			Tetratricopeptide repeat (TPR)...		Potri.010G137200 [exp]	13.22	0.7901
AT2G35330			RING/U-box superfamily protein...		Potri.001G144200 [exp]	20.12	0.8043
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Potri.015G129200 [exp]	21.02	0.7628	Pt-IRE.2
AT2G28130			unknown protein		Potri.009G006200 [exp]	21.35	0.7354
AT3G01380			transferases;sulfuric ester hy...		Potri.001G350700 [exp]	21.90	0.7753
AT1G08030		AQC1, TPST	active quiescent center1, tyro...		Potri.009G011400 [exp]	24.57	0.7947
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Potri.001G212700 [exp]	31.49	0.7584
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Potri.012G060800 [exp]	33.49	0.7800	SCD1.2

Compare expression of checked genes

Potri.018G142400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.