Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57200 655 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 628 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 551 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 541 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 401 / 8e-134 ENTH/ANTH/VHS superfamily protein (.1) AT1G03050 215 / 5e-62 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 194 / 4e-54 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 186 / 3e-51 ENTH/ANTH/VHS superfamily protein (.1) AT2G25430 147 / 2e-37 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT4G32285 143 / 3e-36 ENTH/ANTH/VHS superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G075800 [exp] 806 / 0 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 564 / 0 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 562 / 0 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G125284 [exp] 414 / 5e-139 AT5G35200 646 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T125107 [exp] 414 / 7e-139 AT5G35200 644 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G065100 [exp] 408 / 1e-136 AT5G35200 621 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T124907 [exp] 252 / 3e-80 AT5G35200 357 / 4e-122 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G118100 [exp] 215 / 4e-62 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.002G224500 [exp] 212 / 1e-60 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025462 [exp] 677 / 0 AT4G25940 685 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 566 / 0 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10021796 [exp] 561 / 0 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 560 / 0 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 557 / 0 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10005184 [exp] 413 / 3e-138 AT5G35200 702 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10038122 [exp] 375 / 2e-123 AT5G35200 714 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10015335 [exp] 353 / 1e-113 AT4G25940 385 / 6e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10003642 [exp] 308 / 6e-98 AT5G35200 380 / 2e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10035340 [exp] 198 / 4e-55 AT1G05020 489 / 1e-164 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF07651 [poplar] [flax] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Potri.018G142800.1 pacid=42801752 polypeptide=Potri.018G142800.1.p locus=Potri.018G142800 ID=Potri.018G142800.1.v4.1 annot-version=v4.1 ATGGGAACGTTTACAAGTCTTAGAAAAGCTTATGGGGCTCTTAAGGATACAACAAAAGTTGGCCTTGCAAAGGTCAATAGTGAATACAAGGAATTGGATA TAGCCATTGTAAAGGCTACCAATCATGTTGAATGCCCTCCTAAGGAACGCCATGTTAGAAAAATATTTTCGGCAACATCAGCAATGAGACCTCGAGCAGA TGTGGCATACTGCATTCATGCACTTGCTAGGAGATTAGCCAAGACGCGAAATTGGATTGTTGCGATAAAGACATTGATAGTCATTCATAGGACATTGAGA GAAGGCGATCCTACATTCCGAGAGGAGCTCTTGAACTACTTATACAGAGGAAATATTCTCCAAATATCCAATTTTAAAGATGACTCTAGTCCGCTGGCCT GGGATTGCTCCGCGTGGGTTCGTACTTATGCTTTTTTTCTAGAGGAAAGATTGGAATGTTTTAAGACTTTGAAATTCGACATTGAGGCTGAGCGTCTGAC AAAAACATCACCAGGGGCAACCAAGGTGCATAGTAAAACACGGCTTTTGAATCGAGAGGATCTCTTGGAGCAGCTACCTGCACTGCAGCAGCTTCTTTAT CGTCTAGTTGGTTGCCAGCCTGAAGGTGGAGCTTATACCAATTATCTCGTACAGTATGCCTTGGCCCTGGTCTTGAAGGAGAGCTTTAAAATCTATTGTG CAATCAATGATGGAATTATCAATCTTGTGGACATGTTTTTTGAAATGTCAAAACACAATGCAGTCAAAGCACTTAATACGTACAAAAGAGCTGGCCAACA GGCTGAATGTCTTGCTGAATTTTATGACTATTGCAAAGGTTTGGAGCTTGCAAGGAACTTTCAGTTTCCAACACTGAGACAGCCCCCTCCAACTTTTCTT GCAACAATGGAAGAATATGTTAAGGAAGCACCTCAGTCGGGTTCTGTCCCCAGGAAACTGGAGTATACACAGAGAGAGCCCGAGAAACCTGAGGAGCCTT CAGAACCTGCAGAGCAAGTTGAAAAGGCTGATGTTGAAGAAACATTGATAGATATGGAGGAAGAAGCCAAGCCTGAGGAAGAGGAGGTAGAACCTCCATT AGTATCCACTGATGCTACTGGAGATTTGCTGGGTCTGAATGAAATAAATCCAAAAGCTGCAGAGCTAGAGGAAAGCAATGCATTGGCTCTTGCAATTGTT CCACCTGGTGCCGATCCTCTGTCTTCATCAAATGCTTTGAGTGAACTTGGTAAGCCAAATGCAACAGGTTGGGAATTAGCACTTGTTACCACTCCAAGCA ACCCTACTAGCCAACCAGCACAAAACAAAATGGGTGGTGGTTTTGACCGGCTATTACTTGATAGTTTGTATGAAGACGATGCTGCAAGGAGGCAAATACA ATTGCAAAATGCAGGGTATGGATATGGTGCCACAGCTATGAACAATCCATTTGAACAACCGGACCCATTTGCAATGTCCAACAGCATAGCACCCCCAACA AATGTGCAGATGGAGATGATGGCTCAGCAACAGCAGCAGTACCATCAGCAACAAATGATGATGCAACAGCACTACCAACAAAATCAATCAATGACAATGG TACCTTATCAATATCAACCACAATATCCTCTACAGCAAATGCCTCAGATGGGACAGATGGGTCCTGCCAACCCATTTGCGGACGAATTTTCGAGTTTCCC ACAAGGTTCTGCACCGCATCAAGGAAACCACATGCTAATTTAG
AA sequence Show only first row Show all	>Potri.018G142800.1 pacid=42801752 polypeptide=Potri.018G142800.1.p locus=Potri.018G142800 ID=Potri.018G142800.1.v4.1 annot-version=v4.1 MGTFTSLRKAYGALKDTTKVGLAKVNSEYKELDIAIVKATNHVECPPKERHVRKIFSATSAMRPRADVAYCIHALARRLAKTRNWIVAIKTLIVIHRTLR EGDPTFREELLNYLYRGNILQISNFKDDSSPLAWDCSAWVRTYAFFLEERLECFKTLKFDIEAERLTKTSPGATKVHSKTRLLNREDLLEQLPALQQLLY RLVGCQPEGGAYTNYLVQYALALVLKESFKIYCAINDGIINLVDMFFEMSKHNAVKALNTYKRAGQQAECLAEFYDYCKGLELARNFQFPTLRQPPPTFL ATMEEYVKEAPQSGSVPRKLEYTQREPEKPEEPSEPAEQVEKADVEETLIDMEEEAKPEEEEVEPPLVSTDATGDLLGLNEINPKAAELEESNALALAIV PPGADPLSSSNALSELGKPNATGWELALVTTPSNPTSQPAQNKMGGGFDRLLLDSLYEDDAARRQIQLQNAGYGYGATAMNNPFEQPDPFAMSNSIAPPT NVQMEMMAQQQQQYHQQQMMMQQHYQQNQSMTMVPYQYQPQYPLQQMPQMGQMGPANPFADEFSSFPQGSAPHQGNHMLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57200			ENTH/ANTH/VHS superfamily prot...		Potri.018G142800 [exp]	0	1
AT2G31930			unknown protein		Potri.001G232200 [exp]	3.31	0.8535
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Potri.003G100200 [exp]	6.32	0.8392	PCBERp8
AT1G09930		ATOPT2	oligopeptide transporter 2 (.1...		Potri.002G109300 [exp]	6.48	0.8303	OPT2.1
AT3G04810		ATNEK2	NIMA-related kinase 2 (.1.2)		Potri.002G049400 [exp]	6.70	0.8405
AT4G33450	MYB	ATMYB69	myb domain protein 69 (.1)		Potri.007G106100 [exp]	9.79	0.8445
					Potri.012G034400 [exp]	10.67	0.7949
AT1G04650			unknown protein		Potri.001G053000 [exp]	11.48	0.8169
AT4G22680	MYB	ATMYB85	myb domain protein 85 (.1)		Potri.015G129100 [exp]	14.42	0.8141
AT1G19170			Pectin lyase-like superfamily ...		Potri.018G062700 [exp]	15.29	0.8234
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.004G047800 [exp]	16.52	0.7648

Compare expression of checked genes

Potri.018G142800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.