Plant FIBer expression Database

Potri.018G142900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G19180 80 / 2e-18 unknown protein
AT1G16840 75 / 1e-16 unknown protein
AT1G78890 69 / 1e-14 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G005900
[exp]
86 / 9e-21 AT1G16840 142 / 8e-44 unknown protein
Potri.010G252800
[exp]
86 / 1e-20 AT1G16840 146 / 8e-45 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034821
[exp]
87 / 2e-21 AT1G16840 140 / 2e-43 unknown protein
Lus10037317
[exp]
80 / 2e-18 AT1G16840 133 / 4e-40 unknown protein
Lus10035733
[exp]
78 / 8e-18 AT1G16840 130 / 9e-39 unknown protein
Lus10033369
[exp]
71 / 2e-15 AT1G16840 119 / 3e-35 unknown protein
PFAM info
Representative CDS sequence
>Potri.018G142900.1 pacid=42801362 polypeptide=Potri.018G142900.1.p locus=Potri.018G142900 ID=Potri.018G142900.1.v4.1 annot-version=v4.1
ATGGCAGCTAAAATCCTCTCTAAATCCCTATTCCACCACTGCACTCCCCACCATACTCCCCTCAAATCACCACCGCTAATCCCTATCTACCTCCACCACC
GCCACCGTTCATCAAAACCCCAACTGATCGAAATCAATCTCTCCTCACCATCACTTCAATCAGACGGTGGTAATGGGAGCGAAGATGAAGAAGGGTTTTT
TATTAAGAAACTTGAGGAGATTCTTCACCGTGTAATGCTTCAAAAATCAACACCTGATTGGTTGCCTTTTAGACCAGGGTCCTCTTTTTGGGTTCCACCC
ATATTGAGTGTTAACGATTTGATTCATAAGTTTGCTGGTTATAATCTTAGTGATGAAGAAACGCTTTCGCTTACAACTTGTCGTGGATGGCCTTCCGCTT
CTTATTTTATTAAAGCTGGAATCAATGTGAAGGTGAATGAGGAGGAGGAGGAGGAGCGGGTGGATTTGAAGGTGATGCCTCCTGAGGAGATGGAAGGGAA
AGTGGTAGTGGAGGTTTTAACAGGCCCAACTGATATCGATGTGGCAGTGAAGGAGGAGAAGGGACATGTAAATATTAAGGTGGACCAAAAGGAGGGGGGT
GAGGTGGGAAGGGAAGTGGTAGTGCAGGGGAATGAGGTAGAAGGGAAATTGGAGGTGCTGATTTTGGCAGGTTCGTCTTTGGAGGATGAGGAAGGATAA
AA sequence
>Potri.018G142900.1 pacid=42801362 polypeptide=Potri.018G142900.1.p locus=Potri.018G142900 ID=Potri.018G142900.1.v4.1 annot-version=v4.1
MAAKILSKSLFHHCTPHHTPLKSPPLIPIYLHHRHRSSKPQLIEINLSSPSLQSDGGNGSEDEEGFFIKKLEEILHRVMLQKSTPDWLPFRPGSSFWVPP
ILSVNDLIHKFAGYNLSDEETLSLTTCRGWPSASYFIKAGINVKVNEEEEEERVDLKVMPPEEMEGKVVVEVLTGPTDIDVAVKEEKGHVNIKVDQKEGG
EVGREVVVQGNEVEGKLEVLILAGSSLEDEEG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G19180 unknown protein Potri.018G142900
[exp]
0 1
AT1G75150 unknown protein Potri.002G262800
[exp]
4.24 0.8039
AT1G54520 unknown protein Potri.008G152400
[exp]
5.29 0.8522
AT5G36170 ATPRFB, HCF109 high chlorophyll fluorescent 1... Potri.008G075800
[exp]
6.92 0.7242
AT4G09140 ATMLH1 ARABIDOPSIS THALIANA MUTL-HOMO... Potri.019G078700
[exp]
9.21 0.6970
AT4G27730 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPT... Potri.012G019500
[exp]
20.12 0.8037
AT5G19580 glyoxal oxidase-related protei... Potri.006G160800
[exp]
24.73 0.7912
AT4G30770 Putative membrane lipoprotein ... Potri.005G066500
[exp]
25.29 0.7566
AT4G28850 ATXTH26, XTH26,... xyloglucan endotransglucosylas... Potri.006G160700
[exp]
29.66 0.7896
AT4G22820 A20/AN1-like zinc finger famil... Potri.012G130100
[exp]
30.75 0.7300
AT2G13570 CCAAT NF-YB7 "nuclear factor Y, subunit B7"... Potri.007G103901
[exp]
33.88 0.7903

Potri.018G142900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.