Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29960 251 / 5e-83 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G075900 [exp] 390 / 2e-137 AT4G29960 250 / 2e-82 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001629 [exp] 251 / 4e-83 AT4G29960 256 / 7e-85 unknown protein Lus10001435 [exp] 187 / 2e-53 AT4G29950 661 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G143000.1 pacid=42801025 polypeptide=Potri.018G143000.1.p locus=Potri.018G143000 ID=Potri.018G143000.1.v4.1 annot-version=v4.1 ATGGCAGAACAACCAGAGACGGTGTCGTCGAGCGTGAATCAATCTTCTAACACACAAAATTCTCCCGAAGATAAGCTCAAGCAATCATGGGTGCCGTCGG CATTCTCTGGTTTTCCAGCTTATCCAGATGGTGGTTTTCAGATGTTTCCTGTCATGTATCCTGCACTAGTTCCAGGGTTAAATGCTATGCAAAATCAAGA ACAAGCGAATCATGGGCCTGGCATTTATGCAGTGCCTGTTCCTCAATTTATGGGACCAATTGCTGGACTTCCTTCAAACACCCTAATTCCTCTCACGCTC AACATACCTACTAGACCGACTCCTGAGGCTGGGGCAACCAGTGATCAAGCACAAGGGGGACAACAGCAACTGCAGCAGCCTGCAGCTCAAAGGCAAATTG TTGTTAGGAGATTTCAAATTGCATTTGAGTTGGATTTGTTTCTCATACTTAAGCTGGCAGCCGTAATCTTTTTGTTTCACCAAGATGGATCAAGACAAAG GCTTCTTGTCCTTGTGTTTTTAGCTTCACTTGTCTATTTGTACCAAACTGGAGCTCTGACACCGTTAGTACAATGGCTCTCACAAAGTATGCAAAGGGCA GCTGCCCCTCCCCGTCCACCTAGGCCTGCTGTCAGGGCGGAAAATGCTGCAATAAGGCAGAATGAAGATGTTGCTTTGGCAGAGGGACAACCTGCAGTTG AGAATGAGAATAGACCTGCAGAGGATGGTAACCAAGCAGCTGAGAATGAAAATGTTGCTGAACCTGGCGGAGACAATGGGGGCCACCACTGGTGGGGAAT TGTGAAGGAGATTCAGATGATTGTCTTCGGCTTTATCACCTCTCTTCTCCCAGGCTTTCACCACATAGATTAG
AA sequence Show only first row Show all	>Potri.018G143000.1 pacid=42801025 polypeptide=Potri.018G143000.1.p locus=Potri.018G143000 ID=Potri.018G143000.1.v4.1 annot-version=v4.1 MAEQPETVSSSVNQSSNTQNSPEDKLKQSWVPSAFSGFPAYPDGGFQMFPVMYPALVPGLNAMQNQEQANHGPGIYAVPVPQFMGPIAGLPSNTLIPLTL NIPTRPTPEAGATSDQAQGGQQQLQQPAAQRQIVVRRFQIAFELDLFLILKLAAVIFLFHQDGSRQRLLVLVFLASLVYLYQTGALTPLVQWLSQSMQRA AAPPRPPRPAVRAENAAIRQNEDVALAEGQPAVENENRPAEDGNQAAENENVAEPGGDNGGHHWWGIVKEIQMIVFGFITSLLPGFHHID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29960			unknown protein		Potri.018G143000 [exp]	0	1
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Potri.001G217800 [exp]	4.89	0.8534
AT1G18490			Protein of unknown function (D...		Potri.015G055600 [exp]	6.00	0.8464
AT2G43630			unknown protein		Potri.006G123800 [exp]	16.24	0.8397
AT5G18200			UTP:galactose-1-phosphate urid...		Potri.019G034400 [exp]	18.46	0.8094
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Potri.014G024950 [exp]	26.38	0.8133
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Potri.003G006300 [exp]	30.72	0.8203	HSC70.2
AT5G20700			Protein of unknown function (D...		Potri.006G078300 [exp]	31.74	0.7926
AT2G36130			Cyclophilin-like peptidyl-prol...		Potri.016G075600 [exp]	35.51	0.8247
AT5G42150			Glutathione S-transferase fami...		Potri.005G242500 [exp]	36.24	0.8440
AT4G35360			Uncharacterised conserved prot...		Potri.009G169000 [exp]	36.98	0.7925

Compare expression of checked genes

Potri.018G143000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.